RnoEX6058528 @ rn6
Exon Skipping
Gene
ENSRNOG00000018525 | Slc4a9
Description
solute carrier family 4 member 9 [Source:RGD Symbol;Acc:628811]
Coordinates
chr18:29357737-29358442:+
Coord C1 exon
chr18:29357737-29357795
Coord A exon
chr18:29358018-29358206
Coord C2 exon
chr18:29358329-29358442
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTGCCTACTCTTCTGTTCAGCAC
3' ss Score
6.39
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GAAATGCATCTGAATTTGACAGTACGATGTTCAAAGACACAGAGGATGTCTTAAACGTG
Seq A exon
CACCCAGGCCTGGTCAATGCTTCCTTCCTGCCACCATCCGAGTGCATCCGGCAAGGAGGTTACCCTCGTGGCCCTAGCTGTCACACGGTGCCAGACATCGCCTTCTTCTCCCTTCTCCTCTTCTTTACTTCTTTCCTCTGTGCCATTGCCCTCAAGCACGTAAAGAACAGCCGCCTCTTCCCCTCTGTG
Seq C2 exon
GTGCGAAAGGTGTTCAGCGACTTTTCCTCAGTCCTGGCCATCCTGCTGGGCTGTGGCCTTGACGCCTTTCTGGGCCTAGCCACACCGAAGCTCTTGGTACCCACAGAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018525-'13-16,'13-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(3.7=100)
A:
PF0095516=HCO3_cotransp=FE(12.1=100)
C2:
PF0095516=HCO3_cotransp=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCTGAATTTGACAGTACGA
R:
GTACCAAGAGCTTCGGTGTGG
Band lengths:
155-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]