DreEX6012910 @ danRer10
Exon Skipping
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45171385-45173623:-
Coord C1 exon
chr5:45173549-45173623
Coord A exon
chr5:45171702-45171887
Coord C2 exon
chr5:45171385-45171498
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCTCATTTGTGCAGCGC
3' ss Score
9.09
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCCAATTCTTCAGATGTGTACACTGATCCACTTGATTCAACGTTTGTCTGGACTGTAAATTATACAACAGATCCA
Seq A exon
CGCATGAATGCCACCTGGTCCTCCTTATCAAAGAAGGAATGCCTGAAATATGGAGGAGAGCTGGTGGGTAAAGCCTGTGAATTTGTGCCCGACATCACCCTCATGTCCTTCATCCTTTTCTTTGGCACCTACACCTGCTCCATGTGTCTGAAGAAATTCAAGACCAGTCCCTTCTTCCCTACTACT
Seq C2 exon
GTGAGGAAGCTCATAAGTGACTTTGCTATTATCCTGGCCATTTTGATCTTCTGTGGTGTCGATGCTCTGGTTGGGGTTGAAACACCAAAGCTCATAGTGCCAAGTGAATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730-'20-20,'20-18,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(6.9=88.0)
A:
PF0095516=HCO3_cotransp=FE(11.7=100)
C2:
PF0095516=HCO3_cotransp=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATTCTTCAGATGTGTACACTG
R:
AAATTCACTTGGCACTATGAGCT
Band lengths:
186-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]