BtaEX0033335 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002348 | SLC4A4
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 4 (SLC4A4), mRNA. [Source:RefSeq mRNA;Acc:NM_174605]
Coordinates
chr6:88483337-88506291:+
Coord C1 exon
chr6:88483337-88483407
Coord A exon
chr6:88493328-88493519
Coord C2 exon
chr6:88506178-88506291
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTCATGTTTTTCTTCTGCAGTAC
3' ss Score
9.13
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TTAATATCTCAGTGTCTAATGATACCACATTAGCTCCTGAAGATTTGCCAACCATTTCTTCTTCTAACATG
Seq A exon
TACCATAATGCTACCTTTGACTGGGCATTTCTGACGACAAAGGAGTGTTTGAAATATGGAGGAAAGCTTGTGGGCAACAACTGTGGTTTTGTTCCTGATATTACACTCATGTCTTTCATCCTCTTCTTGGGCACTTACACTTCTTCTATGGCTTTGAAAAAATTCAAAACCAGTCCTTACTTTCCAACCACG
Seq C2 exon
GCAAGAAAGCTCATCAGTGACTTTGCCATTATCTTGTCCATTCTCATCTTTTGTGTAATAGATGCTCTAGTAGGTGTGGACACTCCGAAACTAATTGTGCCAAGTGAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002348_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.4=100)
A:
PF0095516=HCO3_cotransp=FE(12.1=100)
C2:
PF0095516=HCO3_cotransp=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCTCAGTGTCTAATGATACCACA
R:
TGGCACAATTAGTTTCGGAGTGT
Band lengths:
170-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development