GgaEX0017477 @ galGal4
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:49758403-49765326:+
Coord C1 exon
chr4:49758403-49758473
Coord A exon
chr4:49762703-49762891
Coord C2 exon
chr4:49765213-49765326
Length
189 bp
Sequences
Splice sites
3' ss Seq
AAATGTTCTTTTTTCTGCAGTAC
3' ss Score
7.11
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATAATAGCTCATTTTTTAACAGAACAACGGTGCCGTCAACTGAGGGGCTGCTGTATTCCTCTGCTGAGATG
Seq A exon
TACAACACCACCATTGACTGGTCGTCTCTGACAAAGAAGGAGTGCTTGAAATACGGGGGACACCTTGTGGGCAACAACTGTGGATATGTCCCTGACATCACCCTCATGTCTTTCATCCTCTTTTTTGGCACTTATACCTGCTCCATGGCCCTGAAGAAATTCAAGACTAGTCGTTATTTTCCAACCACT
Seq C2 exon
GCCAGGAAGCTCATCAGTGACTTTGCCATTATCTTATCCATTTTGATTTTCTGTGGAATAGATGCCCTGGTAGGTGTGGACACACCAAAACTAATTGTGCCAAGTGAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'31-28,'31-26,33-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.4=100)
A:
PF0095516=HCO3_cotransp=FE(11.9=100)
C2:
PF0095516=HCO3_cotransp=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAACAGAACAACGGTGCCG
R:
GGCACAATTAGTTTTGGTGTGTCC
Band lengths:
158-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]