RnoEX0082835 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20514807-20539503:-
Coord C1 exon
chr14:20539433-20539503
Coord A exon
chr14:20531444-20531635
Coord C2 exon
chr14:20514807-20514920
Length
192 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGTTTTCTTTTCAGTAC
3' ss Score
11.16
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTAATCTCTCAGTATCTAATGATACCACACTAGCCCCAGAGGACCTGCCAACCGTTTCTTCTACTGACATG
Seq A exon
TACCACAATGCTACCTTTGACTGGGCCTACTTGTCAAAGAAAGAGTGTGTGAAATTTGGAGGAAAGCTCGTGGGAAACAACTGTGACTTCGTGCCTGACATCACACTCATGTCCTTCATCCTCTTCCTGGGCACTTACACCTCTTCTATGGCCATGAAGAAATTCAAAACCAGCCGCTATTTTCCAACCACA
Seq C2 exon
GCAAGAAAACTGATCAGCGATTTTGCCATCATCCTGTCCATTCTCATATTCTGTGTAATAGACGCCCTCGTCGGTGTGGATACTCCGAAGCTAATTGTGCCAAGTGAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134-'38-33,'38-32,39-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.4=100)
A:
PF0095516=HCO3_cotransp=FE(12.1=100)
C2:
PF0095516=HCO3_cotransp=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCTAATGATACCACACTAGCCCC
R:
TGGCACAATTAGCTTCGGAGT
Band lengths:
162-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]