HsaEX0065117 @ hg19
Exon Skipping
Gene
ENSG00000198586 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:11841]
Coordinates
chr2:171871361-171884915:-
Coord C1 exon
chr2:171884849-171884915
Coord A exon
chr2:171879382-171879639
Coord C2 exon
chr2:171871361-171871458
Length
258 bp
Sequences
Splice sites
3' ss Seq
CTTGTGCCTCCGTTCTGAAGAGA
3' ss Score
4.72
5' ss Seq
TAGGTGAAT
5' ss Score
3.81
Exon sequences
Seq C1 exon
GTTGACTTTGGCAGAATATCATGAACAGGAAGAAATTTTCAAACTTAGACTAGGACATCTCAAAAAG
Seq A exon
AGATAACAGTATAGCAACAACTCTGCCACTGAAATCCTGTTCTCTGACCGATATTGGCACCTGCAAAGAGAAACAACCAGTAACAGGCAGCAGCAGCATCAGTATTAATCTTCCATGATGAAATCTTTACAGGTCAAGAACAAGTACACAGCTCTTTTCTCACTCCTTCACAGTGGACCATGCAACTAGTTGAAATGGAAGACAATGGATTGTCTACAAGCCTTTTGAACAGTGGAGAATGCAGGGCGTTGGCTTTAG
Seq C2 exon
GAAGAGGCAGAAATCCAGGCAGAACTTGAACGTTTGGAAAGAGTCAGAAATCTTCACATACGTGAGCTGAAAAGAATAAACAATGAAGATAATTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198586_MULTIEX4-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGGCAGAATATCATGAACAGGA
R:
CATTGTTTATTCTTTTCAGCTCACGT
Band lengths:
148-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)