MmuEX0047458 @ mm9
Exon Skipping
Gene
ENSMUSG00000041997 | Tlk1
Description
tousled-like kinase 1 [Source:MGI Symbol;Acc:MGI:2441683]
Coordinates
chr2:70563537-70576544:-
Coord C1 exon
chr2:70576478-70576544
Coord A exon
chr2:70569871-70570123
Coord C2 exon
chr2:70563537-70563634
Length
253 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGCCTCGTTCTGAAGAGA
3' ss Score
4.54
5' ss Seq
TAGGTGAAT
5' ss Score
3.81
Exon sequences
Seq C1 exon
GCTGACTCTGGCAGAGTATCATGAACAAGAGGAAATTTTTAAACTTAGACTAGGACATCTCAAAAAG
Seq A exon
AGATAACAGTGTAGCACCAGCTCTGCCACTGACATCCTGTTCTCTGACCGATCTTGGCACCTGCAAAGAGAAACAAGCAGTGACAGGCAGCGGCAGCGTCAGTACTAACCTCCATGGTGGCCTTTACAGGCTGAGAGCAAGCTCACAGTCTTTTCTCACTCCTCACAGTGGAAAATGCAGCCAGTTGAAACGGACAAGACTGGATTGCCTACAAGCCTTTTGAACAGTGGAGAATGCAGGGCATTGGTTTTAG
Seq C2 exon
GAAGAGGCTGAAATCCAGGCGGAACTGGAGCGTTTGGAGAGGGTCCGGAACCTTCACATCCGAGAGCTGAAGAGAATAAACAATGAGGATAATTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041997_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGAGTATCATGAACAAGAGG
R:
TCCTCATTGTTTATTCTCTTCAGCT
Band lengths:
148-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: