HsaEX0066764 @ hg38
Exon Skipping
Gene
ENSG00000132958 | TPTE2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:HGNC Symbol;Acc:HGNC:17299]
Coordinates
chr13:19424947-19432578:-
Coord C1 exon
chr13:19432473-19432578
Coord A exon
chr13:19430468-19430547
Coord C2 exon
chr13:19424947-19425017
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATTTCATTTTGTTGGAACAGGTG
3' ss Score
7.81
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
AATAGATATGTTGGATATTTTGCACAAGTGAAACATCTCTACAACTGGAATCTCCCTCCAAGACGGATACTCTTTATAAAAAGATTCATTATTTATTCGATTCGTG
Seq A exon
GTGATGTATGTGATCTAAAAGTCCAAGTAGTAATGGAGAAAAAGGTTGTCTTTTCCAGTACTTCATTAGGAAATTGTTCG
Seq C2 exon
AATCTTCCTAAATACTATGACAATTGTCCATTTTTCTTCTGGTTCAACACGTCTTTTATTCAAAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132958_MULTIEX2-16/20=15-19
Average complexity
C3
Mappability confidence:
95%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=PU(13.0=47.2)
A:
PF104094=PTEN_C2=FE(19.8=100)
C2:
PF104094=PTEN_C2=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATATGTTGGATATTTTGCACAAGT
R:
TTTGAATAAAAGACGTGTTGAACCA
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development