HsaEX0066778 @ hg38
Exon Skipping
Gene
ENSG00000164548 | TRA2A
Description
transformer 2 alpha homolog [Source:HGNC Symbol;Acc:HGNC:16645]
Coordinates
chr7:23521707-23532041:-
Coord C1 exon
chr7:23531789-23532041
Coord A exon
chr7:23531181-23531270
Coord C2 exon
chr7:23521707-23521840
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCTTGGCTCTCTATTTCAGTGA
3' ss Score
10
5' ss Seq
GTGGTTAGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCCCGCCCCCTTTACGTCGTGCTCTGAGGAGGCCAGGAGATTTCTGGCGGCGCCGGCGCCATTTTGCTGGAGCCTGCGACCGAGTGGGAGTGGAGTGGAGCGGCTGTGGTTGCCGACTCTTTCCTCTTCCCCACGGTCCAGTCAGCGGGTTAATTAGGCCATCGGCCCTCGAGCCGAGACTTGTCTCTTATTTAGTTCTGGGGAGCGCCTCGTCGACATGAGTGATGTGGAGGAAAACAACTTCGAGGGCAGA
Seq A exon
TGAGCGGCCGCGTCTCTGTTGGAACCGGCGGCGTTGCGTCTAAAAAGGCGAAAGCCTTGAGGTTGAAGGTGGGACGAGCCTAATGAAGTG
Seq C2 exon
GAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCGGAGAGCAGGTCAGGATCTCGTAGTCCATCAAGGGTTTCCAAACACTCTGAATCCCATTCTCGATCAAGATCAAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164548_MULTIEX1-1/5=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGGTTAATTAGGCCATCG
R:
GATCCTGACCTGCTCTCCGAT
Band lengths:
181-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development