HsaALTD0006739-3/5 @ hg38
Alternative 5'ss
Gene
ENSG00000164548 | TRA2A
Description
transformer 2 alpha homolog [Source:HGNC Symbol;Acc:HGNC:16645]
Coordinates
chr7:23521707-23522432:-
Coord C1 exon
chr7:23522354-23522432
Coord A exon
chr7:23522132-23522353
Coord C2 exon
chr7:23521707-23521840
Length
222 bp
Sequences
Splice sites
5' ss Seq
TAGGTTAAG
5' ss Score
-0.45
3' ss Seq
AATACTGTCTTCTTTGTTAGGAG
3' ss Score
6.9
Exon sequences
Seq C1 exon
GTTAATGTTCGTGAAGAAATTGAAGAGTTTTTTCCAAGAATGTGGAAGATAAATCAAGATAAAAGAAGGCTAATGAAAA
Seq A exon
GTATTAAAGATCAGAAAATTAAAATTGAATGGGGGAAAAAATTGAACAGAAGATTGGTCAGATAGAAGCACTTGAATATTTTTTTAAGGCTATTTTGAATTGTTTGAATTGGGGAAGAATACACGAAGTATGAAAAATGAAAAACTCAATGAAGAATGAAGAGAAGTAGAAAGCAAGAGTGAAGTAGAATTAAAAGAATCTGGAAGAATGAATGGGTCCTAG
Seq C2 exon
GAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCGGAGAGCAGGTCAGGATCTCGTAGTCCATCAAGGGTTTCCAAACACTCTGAATCCCATTCTCGATCAAGATCAAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164548-9-4,10-4,11-4,12-4,13-4-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGTGAAGAAATTGAAGAGTT
R:
GGATTTTGATCTTGATCGAGAATGGG
Band lengths:
206-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains