MmuALTD0014711-3/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49252382-49253108:-
Coord C1 exon
chr6:49253030-49253108
Coord A exon
chr6:49252808-49253029
Coord C2 exon
chr6:49252382-49252515
Length
222 bp
Sequences
Splice sites
5' ss Seq
TAGGTTAAG
5' ss Score
-0.45
3' ss Seq
AATACTGTCTTCTTTGTTAGGAG
3' ss Score
6.9
Exon sequences
Seq C1 exon
GTTAATGTTCGTGAAGAAATTGAAGAGTTTTTTCCAAGAATGTGGAAGATAAATCAAGATAAAAGAAGGCTAATGAAAA
Seq A exon
GTATTAAAGATCAGAAAATTAAAATTGAATGGGGGAAAAAATTGAACAGAAGATTGGTCAGATAGAAGCACTTGAATATTTTTTTAAGGCTATTTTGAATTGTTTGAATTGGGGAAGAATACACGAAGTATGAAAAATGAAAAACTCAATGAAGAATGAAGAGAAGTAGAAAGCAAGAGTGAAGTAGAATTAAAAGAATCTGGAAGAATGAATGGGTCCTAG
Seq C2 exon
GAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCAGAGAGCAGGTCAGGATCTCGTAGTCCATCACGGGTGTCCAAACATTCTGAATCCCATTCTCGATCAAGATCAAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817-5-5,6-5,7-5,8-5,9-5-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF104084=Ufd2P_core=PD(76.0=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGTGAAGAAATTGAAGAGTT
R:
ACTTTGATCTTGATCGAGAATGGGA
Band lengths:
204-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types