GgaALTD0004380-2/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000010973 | TRA2A
Description
transformer-2 protein homolog alpha [Source:RefSeq peptide;Acc:NP_001006360]
Coordinates
chr2:31428358-31429081:-
Coord C1 exon
chr2:31429003-31429081
Coord A exon
chr2:31428781-31429002
Coord C2 exon
chr2:31428358-31428491
Length
222 bp
Sequences
Splice sites
5' ss Seq
TAGGTTAAG
5' ss Score
-0.45
3' ss Seq
AATACTGTTCTTTTTGTTAGGAG
3' ss Score
6.11
Exon sequences
Seq C1 exon
GTTAATGTTCGTGAAGAAATTGAAGAGTTTTTTCCAAGAATGTGGAAGATAAATCAAGATAAAAGAAGGCTAATGAAAA
Seq A exon
GTATTAAAGATCAGAAAAATAAAATTGAATGGGGGAAAAAATTGAACAGAAGATTGGTCAGATAGAAGCACTTGAATGTTTTTTTAAGGCTATAATGAATTGTTTGAATTGGGGAAGAATACACGAAGTATGAAAAATGAAAAACTCAATGAAGAATGAAGAAAAGTAGAAAGCAAGAGTGAAGTAGAATTAAAAGAATCTGGAAGAATGAATGGGTCCTAG
Seq C2 exon
GAGTCTCGCTCCCAGTCAAAATCTCCAGCTGGGAGTCCTGCTCGTGTAAAATCGGAGAGCAGGTCAGGATCTCGCAGTCCATCGAGAGCTTCCAAACATTCTGAATCACACTCTAGGTCAAGATCAAAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010973-7-14,8-14,9-14,10-14-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000017877fB1918
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGTGAAGAAATTGAAGAGTT
R:
TCGATTTTGATCTTGACCTAGAGTGT
Band lengths:
207-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]