HsaEX0067834 @ hg19
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166764188-166769134:-
Coord C1 exon
chr2:166769024-166769134
Coord A exon
chr2:166767837-166767975
Coord C2 exon
chr2:166764188-166764294
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATGGAATGAATTTTGTTTAGGCA
3' ss Score
2.39
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
CCTGAAGAAGCCATAGTAGCATATGAGCAAGCATTAAATCAGAACCCGAAAGATGGAACATTGGCAAGCAAAATGGGCAAAGCACTTATCAAAACTCATAACTACTCAATG
Seq A exon
GCAATCACTTACTATGAAGCTGCTCTGAAAACTGGACAAAAGAATTATCTTTGCTATGACCTGGCTGAGCTCTTATTAAAATTGAAATGGTATGACAAAGCAGAAAAAGTTCTTCAGCATGCTCTGGCTCATGAACCTG
Seq C2 exon
TAAATGAACTGTCAGCTCTCATGGAGGATGGACGTTGTCAAGTTCTTCTAGCAAAAGTTTATAGTAAAATGGAAAAACTTGGTGATGCGATCACTGCATTACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(53.7=100)
A:
PF134141=TPR_11=PD(16.4=23.4),PF134241=TPR_12=PU(44.9=74.5)
C2:
PF134241=TPR_12=FE(44.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAGAAGCCATAGTAGCA
R:
CTGTTGTAATGCAGTGATCGCA
Band lengths:
218-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)