RnoEX0094648 @ rn6
Exon Skipping
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52318453-52324796:-
Coord C1 exon
chr3:52324686-52324796
Coord A exon
chr3:52323821-52323959
Coord C2 exon
chr3:52318453-52318559
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTGACATGGACTTTGTTTAGGCA
3' ss Score
4.72
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
CCCGAGGAAGCCATAGTGGCCTATGAGCAAGCATTAAATCAGAACCCAAAAGATGGAACACTGGCGAGAAAAATTGGGAAAGCACTTGTCAAAACTCACAACTACTCAAAG
Seq A exon
GCAATCACCTATTATGAGGCTGCGCTGAAAAGTGGACAGCAGAATTGCCTGTGCTATGACCTGGCTGAGCTCCTCCTGAGACTAAAGTTGTATGAGAAAGCAGAGAAAGTTCTTCAGCATTCTCTAGCTCATGATCCTG
Seq C2 exon
TAAATGAATTGTCGGCTCTCATGGTGGATGGGCGTTCCCAAGTCCTTCTAGCAAAAGTTTACTCTAAAATGGAGAGACCTGGCGACGCGATTGCAGCATTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868-'38-38,'38-36,39-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(55.4=100)
A:
PF134141=TPR_11=PD(15.4=21.3),PF134241=TPR_12=PU(44.2=72.3)
C2:
PF134241=TPR_12=FE(45.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGGAAGCCATAGTGG
R:
CAATGCTGCAATCGCGTCG
Band lengths:
212-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]