MmuEX6101733 @ mm9
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66055242-66061682:-
Coord C1 exon
chr2:66061572-66061682
Coord A exon
chr2:66060711-66060849
Coord C2 exon
chr2:66055242-66055348
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTGACATGGACTTTGTTTAGGCA
3' ss Score
4.51
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
CCAGAAGAAGCCATAGTGGCCTATGAGCAAGCACTCAATCAGAACCCCAAAGATGGAACACTGGCAAGAAAAATTGGAAAAGCACTTGTCAAAACTCACAATTACTCAAAG
Seq A exon
GCAATCACCTATTATGAAGCGGCTCTGAAAAGTGGACAGCAGAATTGCCTTTGCTATGACCTGGCCGAGCTGCTACTGAGACTGAAGCTGTACGAGAAAGCAGAGAAAGTGCTCCAGCACTCTCTAGCTCATGAGCCTG
Seq C2 exon
TAAGTGAGTTGTCAGCTCTCATGGTGGATGGGCGGTCCCAAGTCCTTCTTGCAAAAGTTTACTCTAAAATGGAGAGACCCAGCGACGCGATTGCCGCATTACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(55.4=100)
A:
PF134141=TPR_11=PD(15.4=21.3),PF134241=TPR_12=PU(45.5=74.5)
C2:
PF134241=TPR_12=FE(45.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTGGCCTATGAGCAAGCAC
R:
CGTCGCTGGGTCTCTCCATTT
Band lengths:
186-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: