HsaEX0070280 @ hg19
Exon Skipping
Gene
ENSG00000038427 | VCAN
Description
versican [Source:HGNC Symbol;Acc:2464]
Coordinates
chr5:82832826-82841469:+
Coord C1 exon
chr5:82832826-82838087
Coord A exon
chr5:82840784-82840889
Coord C2 exon
chr5:82841356-82841469
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTCTTCAAGTATAGTTT
3' ss Score
2.3
5' ss Seq
GTGGTAAAA
5' ss Score
2.98
Exon sequences
Seq C1 exon
TGTGGAAGGAACTGAGATTCTCCAAGATTTCCAAAACAAAACCGATGGTCAAGTTTCTGGAGAAGCAATCAAGATGTTTCCCACCATTAAAACACCTGAGGCTGGAACTGTTATTACAACTGCCGATGAAATTGAATTAGAAGGTGCTACACAGTGGCCACACTCTACTTCTGCTTCTGCCACCTATGGGGTCGAGGCAGGTGTGGTGCCTTGGCTAAGTCCACAGACTTCTGAGAGGCCCACGCTTTCTTCTTCTCCAGAAATAAACCCTGAAACTCAAGCAGCTTTAATCAGAGGGCAGGATTCCACGATAGCAGCATCAGAACAGCAAGTGGCAGCGAGAATTCTTGATTCCAATGATCAGGCAACAGTAAACCCTGTGGAATTTAATACTGAGGTTGCAACACCACCATTTTCCCTTCTGGAGACTTCTAATGAAACAGATTTCCTGATTGGCATTAATGAAGAGTCAGTGGAAGGCACGGCAATCTATTTACCAG
Seq A exon
TTTAAAGGAGTACATTTGGAACGTGTTTTTGGAAAAAGCATGTTAATGTAGCAGAAGAGACTTCAGTGCACACTTTCGAAGAAAAACAGTTTCTGAGCATTAAGTG
Seq C2 exon
GACCTGATCGCTGCAAAATGAACCCGTGCCTTAACGGAGGCACCTGTTATCCTACTGAAACTTCCTACGTATGCACCTGTGTGCCAGGATACAGCGGAGACCAGTGTGAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000038427-'17-16,'17-15,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=79.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGATTCCACGATAGCAG
R:
AGGATAACAGGTGCCTCCGTT
Band lengths:
257-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)