MmuEX0051301 @ mm10
Exon Skipping
Gene
ENSMUSG00000021614 | Vcan
Description
versican [Source:MGI Symbol;Acc:MGI:102889]
Coordinates
chr13:89685079-89693501:-
Coord C1 exon
chr13:89688579-89693501
Coord A exon
chr13:89685644-89685745
Coord C2 exon
chr13:89685079-89685192
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTCTTCAAGTATAGTTT
3' ss Score
2.3
5' ss Seq
GTGGTAAAA
5' ss Score
2.98
Exon sequences
Seq C1 exon
TGAAGTTTCCTCTCTGGCAGAGCTCTCTCCACAGATACCATCTTCTCCCTTCCCTGTCTACGTAGACAATGGAGTCTCTAAATTCCCAGAGGTTCCCCATACAAGTGCTCAGCCAGTTTCTACTGTCACCTCATCACAAAAGTCTATAGAGAGTCCTTTTAAGGAAGTCCATGCTAATATTGAAGAAACCATCAAGCCATTGGGTGGAAATGTCCACAGAACAGAGCCTCCATCCATGTCTCGTGACCCTGCTTTAGATGTTTCAGAAGATGAAAGTAAGCATAAGTTACTAGAAGAACTGGAAACGTCTCCCACCAAACCTGAGACTTCCCAAGACTTCCCAAACAAAGCAAAGGATCACATTCCAGGAGAAACAGTTGGGATGCTTGCTGGTATCAGAACAACAGAGAGCGAACCTGTCATTACTGCAGACGACATGGAGCTAGGAGGTGCCACACAGCAGCCACATTCTGCTTCTGCAGCTTTCAGAGTTGAGACAG
Seq A exon
TTTAAAGGAGTACAGTTGGAACGTGTTTTTGGAAAAGGCATGTTAATGTAGCAGAAGAAACGTCAGTGCACACTTTGGAAGACAGTTTCTGAGCATTAAGTG
Seq C2 exon
GACCTGATCTCTGCAAAACAAACCCATGCCTCAACGGAGGCACCTGTTATCCTACCGAGACTTCCTATGTGTGCACCTGTGCACCTGGATACAGCGGAGACCAGTGTGAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021614_MULTIEX1-3/3=2-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=79.5)
Main Inclusion Isoform:
ENSMUST00000109546fB4481
Main Skipping Isoform:
ENSMUST00000109543fB4482
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGGAAACGTCTCCCACC
R:
GGATAACAGGTGCCTCCGTTG
Band lengths:
257-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types