RnoEX0097904 @ rn6
Exon Skipping
Gene
ENSRNOG00000029212 | Vcan
Description
versican [Source:RGD Symbol;Acc:619940]
Coordinates
chr2:18522562-18528935:-
Coord C1 exon
chr2:18525795-18528935
Coord A exon
chr2:18523132-18523233
Coord C2 exon
chr2:18522562-18522675
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTCTTCAAGTATAGTTT
3' ss Score
2.3
5' ss Seq
GTGGTAAAA
5' ss Score
2.98
Exon sequences
Seq C1 exon
GGAAACTTCTCCCACAAAAACCGAGACTTCCCAAGATTCCCCAAACAAAGCAAATGATCAAATTCCAGGAAAAACAGCTGGAATCCTTGCTGGTATCAAAACAACAGAGAGTGGACCAGTCGTTACAGCTGCAGATGACATGGAGCTAGGAGATGCCACACAGCGGCCACATTCTGCTTCTGCTCCTGCAGCTTTCAGGGTTGAGACAAGTATGGTACCTCAGCCCATCCCACAGGAGCCTGAGAGGCCAACCTTTCCTTCCCTGGAAATTAACCATGAAACACACACATCATTATTTGAAGAATCTATATTGGCAACATCTGAAAAACAAGTGTCCCAAAGAATTCTTGATTACAGTAACCAGGCAACAGTCAGTACTCTGGATCTAAATACTGAACACTCAATACCACCATTTTCCATTCTGGACAATTCTAACGAAACTGCTTTCCTGATTGGCATTAGTGAAGAGACCGTGGAAGGCACAGCAGTTTATCTACCAG
Seq A exon
TTTAAAGGAGTACAGTTGGAACGTGTTTTTGGAAAAGGCATGTTAATGTAGCAGAAGAAACGTCAGTGCACACTTTCGAAGACAGTTTCTGAGCATTAAGTG
Seq C2 exon
GACCTGATCTCTGCAAAACAAACCCATGCCTCAATGGAGGCACCTGCTATCCTACTGAGACTTCCTATGTGTGCACCTGTGCACCTGGCTACAGTGGAGACCAGTGTGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029212_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=79.5)
Main Inclusion Isoform:
ENSRNOT00000045532fB16305
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGCAACAGTCAGTACTCT
R:
ACTGGTCTCCACTGTAGCCAG
Band lengths:
246-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]