HsaEX0072136 @ hg19
Exon Skipping
Gene
ENSG00000177125 | ZBTB34
Description
zinc finger and BTB domain containing 34 [Source:HGNC Symbol;Acc:31446]
Coordinates
chr9:129622944-129648157:+
Coord C1 exon
chr9:129622944-129623018
Coord A exon
chr9:129625871-129625991
Coord C2 exon
chr9:129641669-129648157
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTCTATTTAATGTTTTGTAGCTG
3' ss Score
7.08
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CGGGGACTGGCCTGGCGCCGGCGGCGGCGGAGGGGGCGCCGCGGGCGGGCGATGTGAGCGCGGCGCTCTGGACAG
Seq A exon
CTGACAAACTGCTGAATTTAGCTTAGTGAAGGTCATCAACTGAACGCAGTTAAATTTCTAATGGTTATTTTCTGGTTGATGTTGATGGCAAGGAAAACCTCATGGAAGAATGCAAGTCAAG
Seq C2 exon
AGTACGCTTCATGTCAGTAGAAATGGACAGCAGCAGTTTTATTCAGTTTGATGTGCCCGAGTACAGCAGCACCGTTCTGAGCCAGCTAAACGAACTCCGCCTGCAGGGGAAACTATGTGACATCATTGTACACATTCAGGGTCAGCCATTCCGAGCCCACAAAGCAGTCCTTGCTGCCAGCTCCCCATATTTCCGGGACCATTCAGCGTTAAGTACCATGAGTGGCTTGTCAATATCAGTGATTAAAAATCCCAATGTGTTTGAGCAGTTGCTTTCTTTTTGTTACACTGGAAGAATGTCCTTGCAGCTGAAGGATGTTGTCAGTTTTCTGACTGCAGCCAGCTTTCTTCAGATGCAGTGTGTCATTGACAAGTGCACGCAGATCCTAGAGAGCATCCATTCCAAAATCAGCGTTGGAGATGTTGACTCTGTTACCGTCGGTGCTGAAGAGAATCCCGAGAGTCGAAACGGAGTGAAAGACAGCAGCTTCTTTGCCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177125_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=20.8),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)