MmuEX0052669 @ mm10
Exon Skipping
Gene
ENSMUSG00000068966 | Zbtb34
Description
zinc finger and BTB domain containing 34 [Source:MGI Symbol;Acc:MGI:2685195]
Coordinates
chr2:33406108-33431324:-
Coord C1 exon
chr2:33431231-33431324
Coord A exon
chr2:33428101-33428220
Coord C2 exon
chr2:33406108-33412495
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTCCATTTAATGTTTTGTAGCTG
3' ss Score
6.41
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCAGCGGGAGCGGCGGGGAAGGGCCTGGCGCCGGCGGCGGCGGCGGCGGAGGGGGCGCCGCGGGCGGGCGATGTGAACGCGGCGCGCGGCCCAG
Seq A exon
CTGACAAACTGCTGAATTTAGCTTAGTGAAGGTCACCAACTGAGCACAGTTAAGCTTCTAATGGTTATTTTCTGTTGATGTTGCTGGCATGGAAAGCACCCTGGAAGAATGCAATTCAAG
Seq C2 exon
ATTACGTTTCGTGTCGGGAGAAATGGACAACAGCAGTTTCATTCAGTTTGATGTGCCTGAGCACAGCAGCACGGTTCTGAGCCAACTAAATGAGCTCCGCCTGCAAGGGAAGCTATGTGACATCATCGTCCACATTCAGGGTCAGCCCTTCCGAGCCCACAAAGCCGTCCTCGCAGCCAGCTCCCCGTATTTCCGGGACCATTCAGCACTGAGCACTATGAGTGGCTTGTCGATCTCTGTGATTAAGAACCCCAGCGTGTTTGAGCAGTTGCTCTCCTTCTGTTACACTGGAAGGATGTCCTTGCAGCTGAAGGATGTTGTCAGTTTTCTGACCGCAGCCAGCTTTCTTCAGATGCAGTGTGTCATTGACAAGTGCACACAGATCCTAGAGAGCATCCACTCGAAGATCAGCGTGGGAGACGTTGACTCTGTTACCATTGGTGCTGAAGAGAATCCTGAGAGCCGAAATGGGGTGAAAGATGGCAGCTTCTTCACCAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068966_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.419
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0065126=BTB=WD(100=20.6),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types