HsaEX0072651 @ hg38
Exon Skipping
Gene
ENSG00000142065 | ZFP14
Description
ZFP14 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:29312]
Coordinates
chr19:36334453-36362238:-
Coord C1 exon
chr19:36362112-36362238
Coord A exon
chr19:36360435-36360533
Coord C2 exon
chr19:36334453-36341590
Length
99 bp
Sequences
Splice sites
3' ss Seq
CACATTTTTCTTTTAAGCAGGAC
3' ss Score
6.68
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGTTCAGTGACATTCAGGGATGTGGCCATAGACTTCTCACAGGAAGAATGGGAATTCCTGGATCCTGCTCAGAGGGACTTATATAGGGATGTAATGTGGGAGAACTACAGCAACTTCATTTCACTAG
Seq A exon
GACCTTCCATTTCTAAACCAGATGTGATTACCTTATTGGATGAAGAAAGGAAGGAACCTGGGATGGTTGTGAGGGAAGGGACAAGAAGATACTGCCCTG
Seq C2 exon
ATTTGGAGTCCAGATACAGGACCAATACTTTATCTCCAGAAAAGGACATTTATGAAATATATTCATTTCAGTGGGATATAATGGAAAGAATTAAAAGCTATAGCCTTCAGGGTTCCATTTTTAGGAATGATTGGGAATGCAAAAGCAAGATTGAGGGGGAAAAGGAACAACAAGAGGGATATTTTGGGCAAGTGAAAATTACCTCTGAAAAAATGACCACTTACAAAAGGCACAATTTTCTTACTGAGTATCAGATCGTTCATAATGGAGAAAAGGTGTATGAGTGTAAGGAGTGTAGGAAGACCTTTATTCGTCGCTCAACACTTAGTCAACACCTGAGAATTCATACTGGTGAGAAACCTTATAAGTGTAAGGAATGTGGGCAGGCCTTTAGACAGCGTGCACATCTTATTCGACATCACAAACTTCACACCGGTGAGAAACCCTATGAATGTAAGGAGTGTGGGAAGGCCTTTACAGTGCTCCAAGAACTTACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142065_MULTIEX1-1/3=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.020
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF097235=Zn-ribbon_8=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTGCTCAGAGGGACTT
R:
GAACCCTGAAGGCTATAGCTT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development