BtaEX0041536 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023464 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:HGNC:33109]
Coordinates
chr18:47318599-47335114:+
Coord C1 exon
chr18:47318599-47318725
Coord A exon
chr18:47321114-47321209
Coord C2 exon
chr18:47329315-47335114
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCACATTATATTTTAAGCAGGTC
3' ss Score
4.85
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGTTCAGTGACTTTCAGAGATGTGGCCATTGACTTCTCACAGGAAGAATGGGAATTCTTGGACTCAGCACAGAGGGACTTATATAGGGATGTGATGTGGGAGAATTACAGCAACTTCATCTCACTAG
Seq A exon
GTCCTTCCATGTCTAAGCCAGATGTGATTACCTTATTGGATGAAGGGAAGGAACCCTGGATGGTTGTGAGAGAAGGAACAGGAAAACATCACCCTG
Seq C2 exon
ACTTGGAGTCCAGATACAGTGCCAATATTTTATCTTCAGAAAAGGACATTTACGAAATATATTCGTTCCAGTGGGAGATAATGGAAAGAATTAAAAGCTGTAGCCTTCAGGACTCCATTTTTAGAAATGATTGGGAATGCAAAAGCAAAATTGAGGGGCAAAAGGAACCACAAGAGGGATATTTTGGGCAAGTGAAAATTGCTTCTGAAAAAAGGACCACTTACAAAAAGCATAATCTTCTTGCTGAATATCAGAGAGTTCATAATGGAGAAAAGTTGTATGAATGTAAGGAATGTAGGAAGACCTTTATTCGTCGCTCAACACTTAGTCAACACCTGAGAATTCATACTGGTGAGAAACCATACAAATGTAAGGAATGTGGGCAGGCCTTTAGACAGCGTGCACACCTTATCAGACATCACAAACTTCATACTGGTGAGAAACCCTATGAATGCAAGGAATGTGGGAAGGCCTTTACAGTCCTCCAAGAATTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023464_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCAGCACAGAGGGACTT
R:
GAGTCCTGAAGGCTACAGCTT
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development