MmuEX0053208 @ mm9

Exon Skipping

Gene

ENSMUSG00000047473 | Zfp30

Description

zinc finger protein 30 [Source:MGI Symbol;Acc:MGI:99178]

Coordinates

chr7:30573068-30579721:+

Coord C1 exon

chr7:30573068-30573194

Coord A exon

chr7:30574357-30574455

Coord C2 exon

chr7:30577379-30579721

Length

99 bp

Sequences

Splice sites

3' ss Seq

TTCTGCTCTTTTCTTTCAAGCAG

3' ss Score

7.34

5' ss Seq

GAGGTGAGG

5' ss Score

8.41

Exon sequences

Seq C1 exon

AGTACGGTGATGTTCAGAGATGTGGCTGTGGGCTTTTCTCAGGAAGAGTGGGAGTGCCTGAGTGCCTACGAGAGGGATCTGTACAGAGATGTGATGCTAGAGAACTACAGCCACTTGGTGTCACTGG

Seq A exon

CAGGATGTTCCATTTCTAAGCCAGATGTGATCACCCTGTTGGAACAAGGGAAGGAGCCGTGGATGATTGTGAGGGCTGAGAAGAGAAGGTGGAGCCGAG

Seq C2 exon

ATCTGGAATCCAGATACAGCAGTAACGGGTTACTTCCAGAAAAGAATACTTACGAAATTAATCTATCTCCGTGGGAAATAATGGGAAGAATTCAAAGGCGTGGCCCCGAAGACTCCCTTTTGGGGAAAGACTTTGAATATAAAATATATGAAGAACAAGAGAACTCTCATAGGGTATATTTCAGACACGTGATAAAAACCACCTCTGGAAAAAGACCTCGGTACAGAAAACGCACACCTGTTAGTCTCTATCAGAAAACTCCTAACGGAGAAAAGCCCTACGAATGTGGGGAGTGTGGGAAGGCTTTCAAAGTCCGCCAACAACTTACTTTCCATCAGAGGATCCACACCGGCGAGAAGCCCTACGAATGCAAGGAATGTGGCAAAGCCTTCCGACAGTGCGCCCACCTCAGTCGCCATCAGAGGATCCACGCCTCTGACAAGCTCTATGAATGTAAGAAGTGTGCAAAGATCTTCACGTGTAGCTCGGACCTTCGAGGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000047473-'2-5,'2-3,3-5

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.034

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF097235=Zn-ribbon_8=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)

Main Inclusion Isoform:

ENSMUSP00000032803