HsaEX6094741 @ hg19

Exon Skipping

Gene

ENSG00000120784 | ZFP30

Description

zinc finger protein 30 homolog (mouse) [Source:HGNC Symbol;Acc:29555]

Coordinates

chr19:38123389-38135637:-

Coord C1 exon

chr19:38135511-38135637

Coord A exon

chr19:38134166-38134264

Coord C2 exon

chr19:38123389-38127206

Length

99 bp

Sequences

Splice sites

3' ss Seq

TTCTATTATTTATTTTTAAGCAG

3' ss Score

5.47

5' ss Seq

TAGGTAAGT

5' ss Score

9.66

Exon sequences

Seq C1 exon

GATTTGGTGATGTTCAGAGATGTGGCTGTAGACTTTTCTCAGGAAGAATGGGAATGCCTGAACTCATATCAGAGGAATTTGTACAGAGATGTGATATTAGAGAACTATAGCAACTTGGTGTCACTGG

Seq A exon

CAGGATGTTCTATTTCTAAGCCAGATGTGATCACCCTATTGGAACAAGGGAAAGAGCCCTGGATGGTTGTGAGGGATGAGAAAAGAAGATGGACTCTAG

Seq C2 exon

ATTTGGAATCCAGATATGACACTAAAAAGTTATTTCAAGGAAAGGATATTTATGAAATGAACTTATCTCAGTGGAAGGTAATGGAAAGAATTAAAAGCTGTGGACTTGAAGAACAAGAAAGTCCTCATGAGGTGTGTTTCAGGCAAGTGACAAAAACCACCTCTGAAAAAATGCCTACTTACAGAAAACTCACATCTCTTCCTCTGTATCAGAAAAGTCATAACAGAGAGAAACCCTACGAATGTGGGGAATGTGGGAAGGCTTTTAGAGTACGACAACAACTTACTTTCCATCAAAGAATTCATACTGGTGAGAAACCCTATGAATGTAAAGAATGTGGAAAAGCCTTTAGACAGTGTGCCCACCTCAGTCGACATCAGAGAATTCATACTTCTGACAAACTCTATGAATGTAAAAAATGTGGAAAGATCTTCACATGTGGCTCAGACCTTCGAGTACATCAGAGAATTCATATTGGTGAGAAGCCGTATGAATGTAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000120784-'5-7,'5-5,7-7=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.003

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF097235=Zn-ribbon_8=WD(100=9.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF097235=Zn-ribbon_8=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9)

Main Inclusion Isoform:

ENSP00000343581