MmuEX0053208 @ mm10
Exon Skipping
Gene
ENSMUSG00000047473 | Zfp30
Description
zinc finger protein 30 [Source:MGI Symbol;Acc:MGI:99178]
Coordinates
chr7:29788049-29794702:+
Coord C1 exon
chr7:29788049-29788175
Coord A exon
chr7:29789341-29789436
Coord C2 exon
chr7:29792360-29794702
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTTTCTTTCAAGCAGGAT
3' ss Score
8.6
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AGTACGGTGATGTTCAGAGATGTGGCTGTGGGCTTTTCTCAGGAAGAGTGGGAGTGCCTGAGTGCCTACGAGAGGGATCTGTACAGAGATGTGATGCTAGAGAACTACAGCCACTTGGTGTCACTGG
Seq A exon
GATGTTCCATTTCTAAGCCAGATGTGATCACCCTGTTGGAACAAGGGAAGGAGCCGTGGATGATTGTGAGGGCTGAGAAGAGAAGGTGGAGCCGAG
Seq C2 exon
ATCTGGAATCCAGATACAGCAGTAACGGGTTACTTCCAGAAAAGAATACTTACGAAATTAATCTATCTCCGTGGGAAATAATGGGAAGAATTCAAAGGCGTGGCCCCGAAGACTCCCTTTTGGGGAAAGACTTTGAATATAAAATATATGAAGAACAAGAGAACTCTCATAGGGTATATTTCAGACACGTGATAAAAACCACCTCTGGAAAAAGACCTCGGTACAGAAAACGCACACCTGTTAGTCTCTATCAGAAAACTCCTAACGGAGAAAAGCCCTACGAATGTGGGGAGTGTGGGAAGGCTTTCAAAGTCCGCCAACAACTTACTTTCCATCAGAGGATCCACACCGGCGAGAAGCCCTACGAATGCAAGGAATGTGGCAAAGCCTTCCGACAGTGCGCCCACCTCAGTCGCCATCAGAGGATCCACGCCTCTGACAAGCTCTATGAATGTAAGAAGTGTGCAAAGATCTTCACGTGTAGCTCGGACCTTCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047473-'2-7,'2-6,3-7
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACGAGAGGGATCTGTACA
R:
GCCACGCCTTTGAATTCTTCC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types