HsaEX0072819 @ hg19

Exon Skipping

Gene

ENSG00000106261 | ZKSCAN1

Description

zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:13101]

Coordinates

chr7:99627872-99639312:+

Coord C1 exon

chr7:99627872-99627998

Coord A exon

chr7:99628579-99628723

Coord C2 exon

chr7:99630928-99639312

Length

145 bp

Sequences

Splice sites

3' ss Seq

AATGGTGATTTTCTATGAAGAGC

3' ss Score

2.74

5' ss Seq

CACGTGAGT

5' ss Score

9.3

Exon sequences

Seq C1 exon

GCAATGGTGAAGATCGAGGACATGGCTGTGTCCCTCATTCTGGAGGAATGGGGATGTCAGAATCTGGCTCGGAGGAATCTCAGTAGGGACAACAGGCAGGAGAATTATGGGAGCGCATTTCCCCAGG

Seq A exon

AGCTCTGGGTCCTGGATGTGTAGTAAGAACGAGGAAGTTCAAGAGGCATCAGCCAGATAAGACAAGGTGACACTGTTGGCAGACATTTCCATTTGTCTCTGCTGGATCTTAACCCCTCAGGACAGTGCTGCAAAGAAGCCCTCAC

Seq C2 exon

GTGGTGAAAACAGGAATGAGAACGAGGAGTCAACCTCAAAGGCTGAAACCTCGGAAGATTCAGCATCACGCGGGGAGACAACAGGAAGATCCCAGAAAGAGTTTGGAGAGAAACGTGACCAGGAGGGCAAAACAGGAGAAAGACAGCAGAAAAACCCTGAGGAGAAAACCAGGAAAGAGAAAAGAGATTCAGGGCCAGCTATAGGAAAGGACAAAAAAACCATCACAGGAGAGAGAGGTCCAAGGGAGAAGGGGAAAGGATTGGGAAGAAGCTTCAGTCTGAGCTCCAACTTCACCACCCCTGAAGAAGTTCCCACGGGAACAAAGTCTCACAGATGTGATGAATGTGGTAAATGCTTCACGAGAAGTTCAAGCCTTATCCGCCATAAAATAATCCACACTGGAGAAAAGCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGTCTTAACTCCAACCTTGTCCTGCATCAGAGGATCCACACAGGAGAGAAACCTCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000106261-'12-10,'12-9,13-10

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.481 A=0.000 C2=0.387

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

NO

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.4),PF097235=Zn-ribbon_8=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)

Main Inclusion Isoform:

ENSP00000323148f2463A