HsaINT0185859 @ hg19
Intron Retention
Gene
ENSG00000106261 | ZKSCAN1
Description
zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:13101]
Coordinates
chr7:99627872-99635403:+
Coord C1 exon
chr7:99627872-99627998
Coord A exon
chr7:99627999-99630927
Coord C2 exon
chr7:99630928-99635403
Length
2929 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTTTCTATTTATTATGTCAGGTG
3' ss Score
7.86
Exon sequences
Seq C1 exon
GCAATGGTGAAGATCGAGGACATGGCTGTGTCCCTCATTCTGGAGGAATGGGGATGTCAGAATCTGGCTCGGAGGAATCTCAGTAGGGACAACAGGCAGGAGAATTATGGGAGCGCATTTCCCCAGG
Seq A exon
GTAAGACGGATGCAGGCTTACTGTCTGATAAGATGGTTTTGTCTCTCTGTGTGTTAGCTGTGGGATCTCTGATGTGTTCAATTGAGTGTTGAGGAGTTAGAGACTACCTATCCCCTTTTGTAGACCAGATGGAAAGTGAGAATGTTTGTGTTCATTTAACTCCAGAAGCATGGTACTGTGACCCTGATTCCAGGTGGGTTTTTTATTGCTAAGTAGTTTTTGCTCTTTAAAATCAGAAATAATTGAGTTCCAAGTCCTCACCTCTTCAGCCACTCAGTTGCCTGGGAGGCAGTTCTGCTCCGTTCCCATGGATTACAATTTAGGTGCCTCTGTCGGGGGAATATCTTTCCTAGCAGAGATGACCAGGCGAACTGATCATCCGTCTAATCCCAACCCATTGTCCCGGTACCACATTCCCGAAACTACCAAGCATCCTTCTGTTGGCTTTCTGTCTTCTTCCATCCTGTGTGATTAGTGTGATTCCAATACACTGCTTTGTGTAATTCCACGAACTTGCACCTGGACTGTCCTTGTGATGAGGATTCCCAGCTTCCAAACTTAATGGTGATTTTCTATGAAGAGCTCTGGGTCCTGGATGTGTAGTAAGAACGAGGAAGTTCAAGAGGCATCAGCCAGATAAGACAAGGTGACACTGTTGGCAGACATTTCCATTTGTCTCTGCTGGATCTTAACCCCTCAGGACAGTGCTGCAAAGAAGCCCTCACGTGAGTACAGCAATAGGGAGGTCCACAGCAAGCTTCTACCTGGAGAGGGCAAAGGGAGTGTGAATAAAGCGTGAACATGAAGGATGTTACTAATGAAACATCAAGTTCTATTTTTGATCAGGCATAAATGGGGCTTATAATTTCTCTTGGTACTTGCTCTTTGTACTAGATGATTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTTGCTGTTTCCCAGGCTGGCATGCAGTGCTGCGATCACAGCTCACTGCAGCCTCGACCTCTCAGGCTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGCATGCATCACCATGCCCAGCTAATTTTTACATGTTCTGTAGAGAAGAGGTTTCGCCATGTTGCCTAGGCTGGTCTCAAAACCCTTGGGCTAAAGTGATCCACCTGTCTCCACTTCCTGGAGTTCTGGGATTTAACAGGAGTGAGCCACTGCACCTGGTCTCCAGCATTGTTTTCTGTTTCTTTTTTGTTCTGAGTTATTCTGTGTCAGTCAGTGAAGGGTTTAATTATTTTTACTAATGTCGTAACCACTTTTTTCCACCTACTCCTCTGTTACTTGAGCACTGTCAGCTCTGTGTTCCTCTCCTTGTTGGATAGAAACTATTTCCTGTGTCTGAAGATTCCTGTAGCCTGCCAGGTTCAAAACAAGTTCCTTGACCAGGCACAATGGCTCACACCTGTAATCCCAACACTCGAGGAGGCTGTGGCAAGAGGATCGCTTGAAGCCAGGAGTTCAGGACCAGCATGGGCAATATAGCAAGACCACTGTCTCTACAAAAAAATTTAAAAATTAGCCAGGCGGGGTGGTGCAGGCCTATAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCACTTGAGCCCAGGAGATCGAGGCTGCAGTGAGCTGTGCTCATGCCACTGTACTCCAGCCTGGCTGACAGAACAAGACCCTGTCTCAAAAACAAAAACAAAACAAAGTTTCTTGTTTGTTAATCATCAGCTTGTTGATAGAAAACTCACAGAATTGGAGAAATATTTACTATTCCTTTCTTTCTGCTAATACCACTAATCATTTTCTATGAAAGACCTGTTCTTTTTTTGAACTTATGAATAATGTTAGAAATGGAACATGATGTTTTAAATGTATACATAAACCTTCCAATTAATTATCAGGTGATCCAGTAGTAGACCTGTGACCTCTGAAGGCTCCTGCTTCTCATCCCTTCCCTTCTGCTGTGATTTGTTGTCTTCCCTCTGCTCATTCCCCTTGTGTCTGTTTCTTCCATCCTCTCCCCATGCTCCCTCTGTTGTCATTTCCCCTTACTCTCCACTCTTTGCCTGCGCTCTCATTTTCCAAATTTTTGTTGTTCCAAAACTAGGACAACAGATCTTCCTGTTGTCCCAGTTTTTCCCCTTGTTTTTCTCCTATTTTATGTCCAATTAATATTGTGAAGTCAGGCCGGGTGCAGTGGCTCATGCCTGTAATCCCATCACTTTGGGAGGCCAGGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGAGCAGTCTGGCCAACATGGTGAAACCCCGTGTCTACTAAAAAAATACAAAAGTTACCCGGGCGTAGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACTATCCTGGCTAACATGGTGAAACCCCGTCTACACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTCAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCCATTGCACTCCAGCCTGGGTAACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAGTTACCCGGGCGTGGTAGCATGCACCTATAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAACTGAGATCACGTCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAGGAAATAAAAATAAAAATATTGCAAAGTCATTTTGCAGCCGTGTAGAAGCTTCTCGGGAAACTGTCGCTTGACCCACCTGTATATTCAAAAGAAAAAGGTGCGATTTGAATTTTCTATTTATTATGTCAG
Seq C2 exon
GTGGTGAAAACAGGAATGAGAACGAGGAGTCAACCTCAAAGGCTGAAACCTCGGAAGATTCAGCATCACGCGGGGAGACAACAGGAAGATCCCAGAAAGAGTTTGGAGAGAAACGTGACCAGGAGGGCAAAACAGGAGAAAGACAGCAGAAAAACCCTGAGGAGAAAACCAGGAAAGAGAAAAGAGATTCAGGGCCAGCTATAGGAAAGGACAAAAAAACCATCACAGGAGAGAGAGGTCCAAGGGAGAAGGGGAAAGGATTGGGAAGAAGCTTCAGTCTGAGCTCCAACTTCACCACCCCTGAAGAAGTTCCCACGGGAACAAAGTCTCACAGATGTGATGAATGTGGTAAATGCTTCACGAGAAGTTCAAGCCTTATCCGCCATAAAATAATCCACACTGGAGAAAAGCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGTCTTAACTCCAACCTTGTCCTGCATCAGAGGATCCACACAGGAGAGAAACCTCATGAATGTAACGAGTGTGGCAAGGCCTTCAGCCACAGTTCCAATCTCATCCTCCATCAGCGCATCCACTCTGGAGAGAAACCTTATGAATGTAATGAGTGCGGGAAGGCCTTCAGCCAGAGCTCGGACCTCACCAAGCATCAGAGAATTCACACGGGGGAGAAACCCTATGAATGTAGTGAATGTGGAAAAGCTTTCAACCGAAACTCATACCTGATTTTGCATCGGAGAATTCACACTCGAGAAAAGCCCTACAAGTGCACTAAGTGTGGCAAGGCCTTCACCCGCAGCTCCACCCTCACTCTGCATCACAGAATCCATGCCAGAGAGAGAGCCTCTGAGTACAGCCCAGCCTCCCTTGATGCATTTGGCGCGTTCCTGAAAAGTTGTGTGTAAAGGAAGAATTTGCCATCAAGCCATTTCCCCCTTTTGTTTCTAAAATTATTTCAGAGATGTGTGCTCCTGGAGGGAAAAAGAAATACAGCCTCAACAGATTAAAAAACAAAAGTCACACTTAAGGATCCTTCTAGTCACATCAGCAGTGTTCTGCCTTTATGTAGTAGTTGGGCATATAATCCTTCCACACAGCCCCTGCAGGGAAAGGCTAATCTTACGGATAATCCACGTGAGATTTCCACACAAGAGAAAAGCACACGCATAGTGAAATGTCAGTCTTTTCAGTAATGAGGATACCTTTAAGGCACTCTTGGACTCTCGGCAACCACAACATAATAGTTGAAAGATCAAGATTGGCTCCACGAAAGTGATACGGAGGTTAGGATGCTACTTGCTGCAAACAAGCCCTACTTTGGCCAACATCCTGCTTATTTCTCAAAAAAGAGGGACAGTGAAAACAAAAACGACATTGGGACATGCTGCTCAAGGTAGTTATATATACGATAAGTTGTATATATGATCACTGGTAGCCTACCAAAGCTGTAGAAATCTAGGACTGTGCTAATCAGTATCAAACCAAAGATTTCTATCTCTTCCCGAAAGAGAGGGTATGTGCACCAGTCTACAGTTCCAAAGGACTGCAACAAATGTAGATGGTTCTGTCCTCATCCCTGAGATCAGTTCTACTGAAATGGCAACAACAACTCCAAATACATCTCTCCCTTCTTGAAATCCCTAAAGCACTATCGCACTCCTAAATGCATTTCTCCACAAGTTAGCACTTGATTGTATACTGTCTTTTAATCCTTCATTGTTTCATGTATGAAGTTTTTAATCACCCCCTAACCCCCAAAAAAGATTCGGTTGTCAAGGGATATATTTCTATCCCTGCCAGCACAGTGCTGGACATAGTGAGTACTGAACACCTAAGAGGCACTCATTCAGACTGACTTCTACAGGACTTCTACGTGTGTGATAAAAGCCTGTGAATCGTGAGTCCCTGAAATATGGTAGCCTGGCCCAGCTTCTAAAGAGGACCTTCGTAGCCACAAGGCATGCTAAACCTCTAGGGTCTGATGCTGTTTTTGTTCCAAATATAAACGAAAGGCACTAGTCAGCCGCCTGCATAGACTTTCTAAACAGTGAGTAAATACCATGGAATGTCAGAAATGACTTTATCATCGTCATCTTGAAGAAAAATATGAACACTGATGAAGGTCATTTTTTTTTTTTGACATCTTTCTGTGGCAAAGCTCTTAGAATTCTTTGCAGTTAGCTGCTGAACAGTATGATGATTTGGGGATTTTCTGAATCATTTGTACTTAGATACTGGAGTTCAGAAGATGTGATTTTTGTTGCTTTTCAGAAAAAGGAACGTGGTAGGGAGTGTTTTTTCCCACGCTTTTCCAGTAACTTTGCAAAAGCATTAATTGTTCACTGGCAATTACTAAATGTATTTTGTTGCTCTGAGAAACTCAGCAGTGTACTGAGATGTGGCTGGCTGTGCCATCGTCATAGTGCACAGTGACTTTTCTGTTTCTTATCACTAAAGACTGAGGTGAGGTTATGAAACTTTCATTGGTCCCATCGTTGTGCGCAGGGTGCAACTGGCTACCTAGAAGCTGATGGCAGGAGACTGTTTCACACACAGGAGATTGTGAGCTGTGTAAGTAGTCATCGCCACTCAAGTAGGACAAGGGTCCTACCCAAGGCTAGGACCGCCCTGCGGAAACAGAAACATAGACTGAGAACAAACCTCAAGACTATCAGTGTGACCTCCCCATAACAAGAGAACCCCATATATAGTTTGAGACTTTCCCTTGAGAAACTTATACTAAAACTATTACTCATCAGTCATTCACTGATCAGCAGCTAAAGTCCATGAGACCAAATGGTTTTATATGGAACCAACGAAGTGGGAGCTAAAACTGCACAGTGGTCATTCTTTGGCCTCTCCTTGGCTTTATGACTTAAACCAACTACAACTTCCCTATAGCTTCTAAGCAGTTTCATCAGCATTACTTGGGAAAACGTGTTGCAAGTCAACCAGTCACTAGGATATTTCTACCCATGCAACGGAAGAAAAACCCATTACTCCAGAAGAGTATATCTAAGTAACTAAAATGGAGGCAGAAAATGTTTTAAGGATTTTCTTCAAAGAATAAGCCACAGCAATGGTTTTGTAGAAAACTCCTGTGCTTTTGAGCAAGGACTTTTGCCCTCTAGAAAGCAACTGAGGCCAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGAGCGGATCACCTGAGGTCAGGAGTTTTGAGACCAGCCTGGCCAACATGGTAAAATCCCGTCTCTACTAAAATTATAAAAATTAGCCGGGCATGATGGTGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATTGCACACTGCACTCCAGCCTGGGTGACTAGCAAAACTCCATCTCAAAAAAAAAAAAAAGAAAGAAAGAAACTGAAAAGTGAGGTGTGGAACTCCAGGCAACGACCCAAGCACTTATTTTTTAAGAGGGAAAGGACTTTGGTCATGTTTACATTGGCCTTTGGTTTTTTTTTTTCTTTCAGCCACAACTATATGCTGATATAACTCAGCCATCACTTTTGAGTTTTGTTTTTAAATGAAGGTTAAATGTGACCTGTGCCCTCACATTTAATTCCGTTTCATGGAGACATCTTCCTGACTTTGTTGGATAGCTGCCACTAGGGTTGCTTCGATCTTCAGCCACATGCTGTCCTTGAAGCAGCTATTTGAAGATGTGTTTTCTGAGGAAAACAGGCTACAACTGTTTATTAAAACCACTTGCAGTGCATTCGTTTATCAGATGCTCAGTGCAAAGTGTAATTGGGTCATGGTCAAAAACGCTTGCAACATCTAATTGGCGTTCAAGATAGTCATTCAAAAGTTCTTGGCCCGCTGAAGTCTGTTAACAGTTGAAACATTCTACAGTTAACCATTAGCATGCTAGTTGTCCTAATGGAAATTTTTGAAGAGTTTTTCAATATATACCCTACCCTTGCCAGGAAGAGAAGTAAAATCCTCAGGTTGTGGGGTATTTGTTTCTACTCCAGCCTGGCAGGCAAGGCTAAAACCTGAGATTATCGATCTATGAGACATCTTGATATGTAAAGCACTTAATATTAAAGGCATAAAAGTGAAACTGCTAAATATGTATAGAGAGGTTGACGTGTGATACGTGGGACAGTTCACATAGACATCAGAGAATTTATTCCAGAAAGGAGCCTCCTGAATGTGATGAATACGGCAAAGCCTTTAATCACATCTCAGCCCTTAGCATCGGAAAGCTTATACTGTAAATAAACTTGATGAATATTATATGTGAGGAAAACTTTCATGTATAGCACTCATTGCTTCAGACAGAAAATGAATTCCGTCGGTATGTTCCAATCGTGATGAATTTGAGAAACATTGCAAGAGGGAGCTCAATCTTGGCCGGGCGCCGTGGCTCACGCCTGTAATCGCAGCACTTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106261-ZKSCAN1:NM_003439:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.387
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.4),PF097235=Zn-ribbon_8=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)