MmuINT0180333 @ mm9
Intron Retention
Gene
ENSMUSG00000029729 | Zkscan1
Description
zinc finger with KRAB and SCAN domains 1 [Source:MGI Symbol;Acc:MGI:1921820]
Coordinates
chr5:138538681-138549050:+
Coord C1 exon
chr5:138538681-138538807
Coord A exon
chr5:138538808-138541817
Coord C2 exon
chr5:138541818-138549050
Length
3010 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTTCTTACTTATCATGCCAGGCT
3' ss Score
6.11
Exon sequences
Seq C1 exon
GCAATGGTGAAGATCGAGGACATGGCCGTGTCCCTCATCCTGGAGGAATGGGGATGTCAGAACCTGGCTCGGAGGAATCTCAATAGGGACAGCAGGCAGATGAATTTGGGGAATGTGTTTTCCCAGG
Seq A exon
GTAAGACTCATGCAGAATTCCTGTCTGCTTAAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTCTGTGCTGGTTAGTAAGGGAAACATCTGTGTTGTTGAGTTTCAAAGTCATAGTGCTCCAACTCGCTGATTCCTGGCAGGATTGGTGTGTCTAGGGAATTTCTGCTCTTTGAAATCAGATCTTCTGCTCTGAGTCTCTCAGCTCCCCAACCATTCAGTCACCTGGGAGGATTCTTTCTGCTCTGGTGCAGTGTACTTCAGCTTGCCTCTGTCAGGGAAATCTCCTTTTCTTAGTAGAGATAGCAAGGCAAACTGGCCAGTAGTCTAATTCCACCACCACCACCACCCCCTTTTTTTTTTTAACCATGTTCCTAAACCTACCATGATATCCATCCTCCTTCGATGTCTGTCTTTATCCTGTTATCCTGTTAGAGACTGTTCAGTGAGCACTTTGTGATTCCATAGCCTTGCACTTGGTTCCCAGGTCCAAACCCAATGGTGATCTTCTATGAAGAACTCTTAATGCTGAGAGTGTAAGAAGAATGAAGCTGAAAGGGCATCAGCTAGATAAATGTCTTACCCAGCTAATGAAGCTGTGGCATGGGTCTCTTCTAGATCTTAAGTCCTAGGACACAGTGTCACCAAGAAGCCCAAAGATGTGTGCAGTAGTAGAAAGTTTCATAGCAAAGAACTACTGGACCTTGGGTGGGCAGAGGGAGGATGAACAACGTGGGTGTGGAGAAGCTAGGGTTTGGTTTAGAAACGGGCATAAAAGGGAGAATTGTACTTTATGCTGAATAGAAATTAAGAACTGGTCTTCACTTCTAAGCCATCACTACTATAACCTTTGAAAGAAAAACAGATGGAATAAACACTCTTAAGAACTGTCCAGCAGCTGGTCAAGGACCTTTGTTTGGAATTCAGAAGAAGTTGAGCAGCTTTTTCTTCTCTGCAGTTGGTTCAGTGATTATGATAATCCCATCCATAAGTCACAGATTAGCTATAACCAGTTCCTCTAGTCACAGCGTTCAGGAGCCTACTGAACGAGATGGAGCAGACCCTCTTGGAGTCTGCACTTAAAAGCAAAATGCAGGGCCAGTGAGATGGTTCAGTAGGTATAGACACTTGCTGCCAAGCATAGCAACCAGTTTGTCCCCAGTATTGAAAGGAGGGAGTCAAGTCTCAAGGGTTGTATTCTAGCCTCCACACATGCATCATGGTAAAAACATGCACACACATACACACACACACACACACACTCACACTAAATACTAAAAAAATGAATAAATGTTTCAAGATTTTGTTAGGGTTGTAAGAGATGGCTCAGTCCCAGCTCTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAACCTGGTGGTCTACAGGGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAATCCTGTCTTGAACCCCCACCCTACCCCCATCTCCCCAAAAAGAGATGGCTCAGTAGTGAAGTAGTAGTAGACCACTGAGTGGTCTTCTAATGGACCTGTGTCCAATTCCCATCACCAATTTGATACCTCACAACCATCTATAACTACAGATCCAGGAGATCTAGCGCCCTCTTCTGACCTCTACGGACATGGTACATATTCATCTATATGCAGGCAAAACACCCATACAAACACAAAAGTTTTTTAATTGTTGGATTTTTTTGTTTGTTTTTGAGATGGGGCCCAGCTTCTTTTTTAGATGAAGCTGGCCTTGAACTCACAGAGATCCAACTGCCTCTAACTCCCAAGCACTGAGATCAAAGGAGTGAGCCACCACACCCAGGCGGATTTTTTTTTTCCTTCAGTGGGGTATAGCAGTGTTCAGTAAAATTTAAACTTCAATATTTTAATATGATGGTTGCTAAAATGCAGAGATTAACTCTACATTGTAAAATTTGTTTTCTGGTACTTCTGATTAAAATCTCAGGAATTGTTTCTTTGCTGTAAGTCTCAACTGTCAGTTGGGGAAGATTTTATCTATTTTGGTAATGAATCCCCAGATAGTTCCTTCATCCTTCCCTGTTACGTGCGCTCAGGTCATTCTGTGCTGTCTGAGCCCTGTAGTACCAGGTGCAGGCTCCTTGTACCTGCCTACGCCCTTGTTGATAAAATATGACAGAACTGGAAGGGTCTGCTCTCCTCCCTCCTGCCAACAGCACTAACCAATTCCTCACGATGACCTGCTGGTTCTCTTTGTAAGACATACAAGTATTTGCTGGAAATGGAAGGTGACTTATTTCTTACTGCGTTTTATTTTTGTAACAAGGTCTCATTGTGTAGTTATGGCTGGTCTTGATCTTATGTAGACCTGCCTGCCTGTTCCTCTCATGCTGGAATTAAACCTTTAGTGGGACTGCTTTTTTCTCTTGACACAGAGTCTCTATGTAGTCCTGGTTGTCCTGGAAGTCCATATAGAACAGACTGGCCTTGAACTCAGGAGATCTTCCTGCTTCTGCCTCCAGAGTGCTGTGATTAGAGGCATGTACCACCATGCCGAGCTGTGACTTGTTAAATATGTTTTCTTTCAAATTAGTTATCAAGTGACTATATAATAGAATAACCCCTGAAGCCTCTCAATTCCTCATTCTCTCCTTCCATTCTCTGTTCAAGTCCCACCATGCTTGTTTATTCGAATTCTTTTGGCTCTTGTTTTCTTTTGAGATGGATCTCACTATGTAACCAAAACTGGTCCATCACTGCTGATTCCCCTGCCTTAACTACCAAATGCTGGGTGTGCACCGCTGTGAATGCACCACTCTGCCTGGCCTTCTTTGGGCTCTTTGTGACTTTTTTTCCACTTCCATTCCAGCTCTTCTTCCCGGTGTTGTTAAATTTTTCCCCTTTTCTACTTTTATCTTTAATACTATGAAGGCATTCTCCAGGCACATAGACACTTGATAGAAAATGTCACTGTATGAGCACCTGCATTCAAAGAAAATGATGCTATTTGTATTTCTTACTTATCATGCCAG
Seq C2 exon
GCTCTGAGAACAGGAATGGGAATGAGTCAACCTCAAAGGCTGAAGTCAAAGAAGATTCCACCTCACATGGGGAGATAGCAGGGAGATTCCAGAAGGAATTTGGAGAGAAACGGGAACAGCAGGGCAGAGTAGTCGAAAGGCAACAGAAAAATCCTGAAGAGAAAACTGGCAAAGAAAAGAAAGAGCCTGGGCCACCTACAGCCAAGGAAAAAAAGCCCAGCACAGGAGAGCGGGGCCCGCGGGAGAAGGGTAAAGGTCTGGGGAGAAGCTTTAGCCTGAGCGCAAACTTTAATAACACCCCAGAGGAGGCTCCGTCGGGAGCAAAGACTCACAGATGCGATGAGTGTGGGAAATGTTTCACAAGAAGCTCAAGCCTTATCCGCCATAAAATCATCCACACTGGAGAGAAACCCTACGAATGTAACGAGTGTGGCAAAGCCTTCAGTCTCAATTCAAACCTTGTCCTTCATCAGCGAATCCACACGGGAGAGAAACCTCATGAATGTAACGAGTGTGGCAAAGCCTTCAGCCATAGCTCAAATCTCATCCTGCACCAGCGCATCCACTCTGGAGAGAAGCCCTATGAATGTAACGAGTGTGGCAAAGCCTTCAGCCAGAGCTCAGACCTCACGAAGCACCAGAGAATCCATACAGGAGAGAAGCCCTATGAATGTAGCGAATGTGGAAAAGCTTTCAACCGAAACTCATACCTTATTTTGCATCGGAGAATTCACACCCGAGAAAAGCCCTACAAGTGCACTAAGTGTGGCAAGGCCTTCACCCGGAGCTCGACCCTCACACTGCACCACAGAATCCATGCCAGAGAGAGAACGTCAGAATACAGCCCAGCCTCTCTGGATGCCTTTGGGGCATTCCTGAAAAGTTGTGTGTAAAGCAGGAGTGTCTCGTCAAGCCATTTCCCCCCTTTTGTTTCTGGAATTACCTATGTACCCATCGAGGGAAAAGTAATAGCACCATCGAATTGTTTGGGAAGTCACACTTCAGGGTCTCTAACAGTTACATCAACCATGTCCTCCCTTCAGGAAGTCTGTAGACATGCAATTCTTAAAGTCCGTGTAAGGGAAAGCTGGCCGTGTGGATATTCCTGCACTCAAGATAAAAGCATGCACAGTAAACTGTCAAGCTTTCTAGTCATGGGTATACCTTTAAGGTTTGCTTCCCAGCAACCACACCATATAGTTGATGAGTCAAGATCAGCTCTGTGAATATTATACTGGTTAAGCCACTTGCTGCAAACAAACCCTAATTAGACAACTTGTATTTCACAATGAAGAGAGATAGTTAATACAAAAACTACATTGGGACATGCTGCTTGAGCAAGTTGTAAATCCAGAAGGTTCTATATCTGATCACTGGTAGCCTGCCAAAGCTATAGAAATCTAGGACTGTGTTGGTCAGAATCAAACCAAAGATTTCTATCTCTTTCTGAAAGAGGGCATATGCACCAGTTTATAGTTCCAAGGACTGTAACAAATGTGGATGGGCCTGCCCCCATCAGTGAGATCAGTCCTACTGAAATAGCAACAATTCAAGATGCTTCTCTTCCTCTTCAACATCCCTAAAGCACTCTAGAACGCCTAAATGCACTCTCCACAAATTAGCACTTGATTGTATACCATCTTTTCATCCTTCAGTGTTGGAAGCTTTTATCAATCACCACTCCCCCAAAAAGATGCTTCAGTTGTCAAGAAATATAGTTATGTTCCAGACAGCACAGCACTGGATGTAGTACTAAACACACACAAGGCACTCCTTAGGACGGACTTCTAACATCACTGTCATATTTGTGGTAGGGTCTGTAAATCATGTGAGTACCTGAACTATGGTACCTTCAGACCTACAGGACATGCTATAATGTATTCTGGACTCAATGTTATTTTGTCCTAAGTATAAACAAAGGTTGGTCAGCTACCTGCAGAGACTGCAAATATGGGTCAGTAAGTAAATACCACAGAGTATCAGAAAGGATTCTTGTCATCCACGTACAGAAGAAAACTATGAACACTAACTATGAAGTTTCTGTTTGTGTGACATCATTCCACAGCAAAGCTCTTGTTCTTGGCCAGAGTTCTTTTCAGTGAGCTGCTAAATGGTGGCATTTTGAGCACTTGCTGAGTTGTTCATCACTTAGCCAATCCTGTTCAAAAGATGTGAAGGGTTTTTGTTGTTGTTCTTTTGTTTGATTTTTTTTAAAGTTTTTTTTTTTATTTGTTTTATTTCTCAGAGAAAGGGAAAGTTTAAGGGAGCATTTTTCCTCTCACATTTAACCAGAAACTTGTAGAAGCATCTGTCATCATTAGCCAGCAGTAACTTAAGATGTCCTGTAGCTCTGAGAAGTTCACCACCACACCAGTGTGGTTGGTTGTGTCACTGTATTTAATAACACACAGTGTCTTTTCTGTTTCTCATGAAAGACTAAAGTGAGGAAGTGAGGTTAGGGGACTTTAGCCTTTCCTGTCATCTCTGCAGGTGGCTTCCCAGAAGCTCTTGATGGAGACATAACACATACAGGAGACCCCAAGTATCAAGCTATGCAGGTATTGGGATCTTGAACAGACAGCTTTATTTAAGGAAGCATTGAGATAGTGTGGACAGCCCTACAGAACCCTAGAAACATAAGCTAAAGACAAACTTGAAGACTGTTGACATGGACACCCCGCCTATGGTTGAGATTTCCCCTCAAGAAACAACTAAAATCACCTTGCACCAGTTGTTCACTGGTGACCAGCAGCAAAAGTCGGTGAGACACAATAGCAGCAGGTCTCATCAGGTTGGTACCTGTGACCTCTGTTCCAAGTCAGACTAGAATCCTACAAACAATCACTGGTTCTTGCTTGACTTTATTTCTTAGACCAATCCTAATCTCTGGCGGCATCTGAGCTGTTTGCTTAGTGCTGCCAGTGAGTGTTCTATCCATCCAGCTGAAAATCAACAGAGCTACTCTGAGGATTGCACCTGACTCACTTTCTGGAGTGAGGTGGAGATAAAGAGGTGCTTTTTAAGGTTCTCTTAAAGGAATGAGTCATATTAATGGTGGACTTTTGTGTGAGAGCTCTGGCCTGTTTGGTTTTTTGTCTTGTTTTGTGTTGGGTTTTTTTGTTTTTGTTTTTGTTTTTTTTTTTTTTTAAAGCAACTGAAATAAGGTACAGGACTCCAGGAGCACATCGAGACACTGGCTTTGATCCCAAGAAAGGACTTTGGTCATTTCCCTTTTGGCTGCTTATACACAGACAATTAACCACATGCTGGTGCACTTCAGCCGTTATTCTTTGTTCTTAAATGAAATTAAGACTGACCTGTGATCCCATCCCTCATTTGATTTCCATTTTACTGGAACGTTTTACTATTAGATAGTCACTGGGATGGCTCCAGATCTTCCATGGATGCAGTCCTGGAGGCAGCCACCTGAAAATACATTTTACTTAGAAAGCTGACTATAGGTGGTTATCCAAATTTCTTAGATGCTCAGCAGTGTCACTGCATCGTGGTCAAATGTGGTGACATCTGTCGTTAGTGCTCAGGCTAGTTAACAGCCTAAGTGCTTATTAGTTAACCATCAGCATGCCGATTGACATGATGGAACTTTAAGACTTCTTAAATGTACTTTACAACAAAAGCCAGATTCTTCAAGTTTTGAACTTTCTACTTCAGCCTGGCAGGCAAGGCTAAGCATTGATGTGTGAGACAACTTTATATGTAAAGCACTTGATATTAAAGGTATAATCGTGAGACTGTTAAATATGTGTAGAGAGACTGACATGTTAAATATGTGAGGCAGTCCATGCCTTATATACATCAGAGAATTGATTCCAGAATGGGACCGAGTCCGAGTGTGATGCCTGGCAAAGGTTACACTGTAAATAAACTCTTTCTGTGAGGCCAGCTTTATGCACTCATTGCTTTGGACAGGAAATTTCCATTGTGCATCTCAATCATGCCGTAAGTTCAGAAGCTGCCAGAAGAGCTCAGTCTTAACTCCAGAGGACCCACAGGAGAGCCCAAGTGTGGGCAATGCTAAAGAAACAGTAAAAACTCACAACTTCTTACAAACGGTGAACACTGAGTACCTCGGTGTATTCTGTAAGGTCATAATGTCGGTGTGTCTTTGTACCTCACCCCTCCTGTCATTCTTTATAGTCCTTGTAAACGTGTTCCAGTCCGTTGAACAGATCCCATCACCTGGGAGCGGGGAGAAAGTGAAGTTTTGGAGTAGTTAAGAAACTATAGTTATAAACGTGATTAGGTCTCAGAACTAGGGGTGTGGAAGAAACTTCTTAGGTTGGTGCTTGTTGAACCGAGAAAAGTCTGTGAAAAGAGCTCAGTAGAACACTAAAGTGGAATAATTGTACATGCCCCTTCCTGGTCTCTCACTCAAAGGGAATGGGCAGGCTCTGGCTTAGAGGTGGGCTGAGGGCTTCTCCATTGTTAATATATTTGGGGGAATATATAATCAACAGAAGCTAGGAAGTATACCGGAAAGGCTAGTTTGTCCAGATTCTTTGAGCCATGGTATCATAGTTCAGTTTTCCCACTCATAAATCCTCTATGCTTAGACAAATAGGGACTCTGTCCACAGGAAGGACTACTTTCCAGGAAACACAAGTAGGTCTTGCAGGGAAGGGGAGCTATCTCAGAGTTTGCAAAGCATTGCAAGATTTGCTTTTGCTTTACTGCAAGTTCCTATCTTTGCTCCCAATCTCTGGTGTATTTGTGCTTAAGAGACAGTGTTTGAAGATTCGTAGCTGTGAATATTTGTTGATTTAAGATTTTATCTTAGAATTGCCAACTGTATTTCCAGTAGGCAATGCTGATCTGTTATCAAAAGGGAATTTAATCAAGCTCATCTTGCCATCCTCCTGGAAGACTAATTTTGTCACTGGAGTGACAATGCTGAGACAGACACTCAAGACAGCAAGCTTGCCACAGAGCCATTTTCTGTGTTCCACTATGAGCAACTCTCAGAAGTCTGTATGAAGAAGGATTAGGGGTGTGGTTCCATCCCCAGCACTGCATGAAAAGGATGTGCTGTCACATGCCTGTGATCCCAGCACTTAGGAAGTAGAGGCAAGAAGATCGGGAATTTGGGATCATCCTCTGTGACATAGCAAGTTTGAGACCTGCCTGAACTGCCAGAGATCTTATCAAAAACAAACAACCCCCCCCCCATAACTATGTATATGTAAGGGAGCCAGGCAAGGTGGTACATTCCTTTAATCCCAGGACTTGGGAGGCTGGAACAGTTCACAAGTTCACAGCCAGCCTGTTTCCAAAGAAATAGAAATGTGCAGGTATTTCCCATTAGGCCTGTGAATTGTATGAAATATAGAACCAGAGAGGCAAACTTAAATGATGTAAATAGATCACTTCATAGAAGTCAGAGTAGATTTTTATTTCAACTACTACTGGAGGCAACGAGCATTGTTGGAAAAGTTTTCCTAACATAGATCTAGGCTTTGCTCTTAGTATGGAAACACTACTGTAAGTTTTAAAGAAGTTACTTATTTTGCTATTCATATTTTTTTTTATGTCTGAAAATACCTGACTTAAAACTTTGTAAAACAAACTTGAAGTTATAGGTAAGGTAAGCCATCACCAATACTGCAGGTCAAACATAAGTTTGGGAAATTATTTTGATATCCCATAATACTAATGTTCTAGTAGTTTTCTATTAACTGGTTCTGTTTCCTAGTTGATAACCCAATCCCATGTTATCCTATATTAATCTAAACAGCAAAATGAAGAGAGTGAAGCTTACTCAGCTCTAAGCTGTGGTTCCAAATGAAAAATGTCACAGTCTGCTATGAAATTAAGAATTGATTTTTTTATTTTTGTTTAACCTGGGAGGTTGTGATACACCCCCTTACAAAAACTGACTCAATTTACTTAACTGACCCAAATTACTTGATCATTAGCCAAATTAATTGATCCTTGAAATGGTCTCAGTTCATAAGCACTCAGGTTTGTGAAGGACTAGAAGAGGCTGGACCTTCATTCCAGTTTGACATTGGGGCTAAGTCCTGTTGGTCCACAAAACGACAACCAGTCACACTGAGTCATTTATCCTGTAGTCTCCAGCATGTTACAAGAGAATGGCCAAATGAGGTCTAGCAGCCTCATGATCTGCTAAGAAAGTGCTGAGGCCAGAGAAGCTTGACTGGGGGGTGGGCAGGTGGTTGCTCACCTTCCTTTCTATCTTAATTGGTAACAGCTTGAAGTGCCAGCCAGCCCTAGCTGGACTGAGAGTGTGAGACTTGGGCTCAGTTTCTCCTCTGCTCTCAAACCGCCATCCCACAAACATGGATCAAGTAATGCAGTTTCTAGAGCCAGGTTGGCAGTTTGTAAAGGACTCAATTCAGCTGGTTAAAAGATGCACCAAACCCGACAAAAGAATTCCAGAAGCTTGCCATGGCTACAGCTATAGGATTTGCTATCATGAGATTCATTGGCTTCTTCGTGAAACTGATCCATATCCCTATTAATAACATTATCATGGGTGGCTGAGTCCTTTTTCATCATGGGACAAGTGAACCAGTGAGGGGGTGACAAGCTCATGAAATAAAACATTGCCTGGAAAAAAAGAGAGAGAGAGACTTACCTGGAATCCCTCAGTGAGGGGTGTGGCTCAGTTAAGAGCATTTACATAGAGTAACCCATGAAAGTGAATGTGAGTGGCCACAGGACATGGTGCCAAAGCAATAGAGCATTTGCTAGGATACCCTATTAGTGGGTGGGCTGTGATGTGGCTCCGTGATTGCCTACCATATGCAAGTCCCTTGGGTGCAATCTCCAGCACTGCCCTGCCCTGCCCAAAAAGAGTTCTTACTTTCTCACGGGAGGAAGACTGTGATTAAACAGAACATTCTTGTCCTAAGAATTCGAGTGTTAAGGGTTAGGGTGGTTGTGCAAGCAAATTTTTAAGTTGTATTTTTATAAACTTTCAGTTAAGGATTATTATTAACAACCAGGTCAACATGATAAGCCTACATTTATATAGAGAGTTAACTCAGGCACTGTCTTTTTGTTCATAGGCTAGATAAACCATCCTGTTTTATCCATCCCCAGCATATACTAGAATAAATTAGACCCAAAGAAGAAACTTTGTATGCCAGCAGGATTAAAATCATTGCTGTTAAAAAGTGGAACTTTGATTTGACCAGCCTCTGAAGAGTCCAGATGTTTAGTAGATGTTCAATAAATAATTTTTAAATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029729-Zkscan1:NM_133906:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=NA C2=0.397
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.4),PF097235=Zn-ribbon_8=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: