BtaINT0164628 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016757 | ZKSCAN1
Description
zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:HGNC:13101]
Coordinates
chr25:36941800-36944785:-
Coord C1 exon
chr25:36944659-36944785
Coord A exon
chr25:36942693-36944658
Coord C2 exon
chr25:36941800-36942692
Length
1966 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTTTCTATTTATTGTGTCAGGTT
3' ss Score
8.51
Exon sequences
Seq C1 exon
GCAATGGTGAAGATCGAGGACATGGCCGTGTCCCTCATCCTGGAGGAATGGGGATGTCAGAACCTGGCTCGGAGGAATCTCAATAGGGACACCAGGCAGGAGAATTATGGGAACGTGATTTCCCAGG
Seq A exon
GTAAGATGGGTGCAGGATTACTTGTGATAAGAGTGTATTGCTTCTTTTTCCAGTAGCTGTGGGATCTTTGATGTGTTAGACTATCGAGCCCCTTTGTTCAGACCAGATGGAGAAGGAGAACACTGTTTATTTCATCCCAAAGCCTGGCACTGGGCCTTCCTGACTCCACGTGGATTTCTTAGGTCTAGGTAGTTTTACCTCTAGGGAGTCCTTTGAAAGCAGAAGTAACTCTTGCGTTCTGATTCCCTACCTTTTCAACTACTCGGTCACCAGTGAGGATTCTGCTTCATTCCCTGCGGTTACAATTGAGGTGCTTTTGTTGGAGTTGGGGAGTGTCTGTATTTTTTAGTGTAGAGGGCCAGGTGAACGAACGCTGACCATCAGTCTCATCCTAACCTGGGACCTGTTCCTGAACCCACCAGGCATCCTTCCACGGGTTTTCGGTCTTGCGTCCTACGAGCGCTGCTCCGCCAAAACTCTGTGTGTGTAATTCCATGACCTTATGCCTGTCCCTCCCTCAGGGTCAGGTTTCCTAGGTTCCAAACCTAATGGTGATCTTCTGTGAAGAGCTCTGGCTCCTGAGTGTGTAGTAAGAACAAAGAAGTACTCAGAGGCATCAACCGGATATGACAAGGTGACGCAGCTGACAATCTCATTTGTCTCTGTTAGGTCTCAACCCCTGGGAGACTTCGCTGTAGGAAACTGTCAAATCAGTCCTGTCACAGGGAAGGCCCACTTCCTGAGACTTCTGCCTGGGGAGAGCAAGGGGAATGTGAATGAAGGGAGGATGTTACTACAGAAACTTCAAGTTTTGTTTTGAACCATAGGGTTAGCTGGGGTTCATTTTTTAATACTTGCTCTTTGGACAAGGTGAAAATTAAGCCAAAATACTGATCTGTGTTTGTGAGCTGCGTAGTACCCACCTGTTGCTAACTTAAAACATAGGGAACCATCCAGATCATCAAGGACCTAGGCTTGGAATTCAAAAGAATAGACCAGTTTGATTTTCCTTATGATTGGGTCAGTATTTACGGCAGTTTCATCACTAAAGTCAGGGGCTAGATACTCAGCTCCTTCAGTGGTTGTGTTGAGGTAGTGCACACCCACTTGGAAAGGTTTCTTAATGCCAAATAAGTGAAGAATAGATTTGGATTAGTTTGGTTTTTTCTCCTAGACAAACGTAAACATATAAAATAGTGTTTTTGTACTGAACAGTTTTTAGTCTCTGCTTAAAAACAGGGGGGCACACAGACTATAGCAGTCTGCAATAAAAATATATTCCAGGTTTTGCAGGTTGCTAAAATCAGAGATCAGCTCTGCATTTGTAAAATCTTGTTTTCTTATATTACATCCTTTGTGAGCCATCTCCAGACATGTTTTCACTTTCTTTGTTCTTAGTGATTCTCAATCATCTGTCAGTGAAAGTTTCAGTTACATTTACTGATGCCCCAATCAGCTTCTCTCCCTCAGCCCTGTTACTTGAGCACATCACCTCTCTTCTCCCTGGTGGAGAGAAACCATGTCATGTGTCCCAAGATCCGCGTCACCTGCCAGACTCATTCTAATTTCATAAATACCAAGTTAAAACTGAAACTTTTTTTTTAATGTGTATTGATTCTTTCAAATTAATTATTGGGTGACCAATTAAAGAACGATGCGTTGTGACCTCTTATGTTCCTTAATGCCTCACCCCTTCCCTTCCTTTCTTGCCTGGTCTGTTCCTTCTGCTTGTTCCCAGCTTCTGCACACTTCCTGCATTGTCCTTCCTACTCTTTGCCTGCCCTCGAATTTCCCAGTTCTCCCTGTTGTCCCTATGTTTTTTTCCACTGTTCTACTATTTTGTCTACAATTTGTACTGTGAAGTCATTTTGCAGGTATGTAGAGGTTTCCTGGAAAAGTGTCACTTGAGTAACCCATGTATTCAAAAGAAAAAGGTGCTATTTGTATTTTCTATTTATTGTGTCAG
Seq C2 exon
GTTGTGAAAACAGGAATGAGAATGAGGAGTCCACCTCAAAGGCTGAAAGTGCAGAAGACTCGGCATCACGTGGGGAGACTGCAGGAAAATTCCAGAAAGATGTCGGAGAAAAGCGTGAACAGCAGGGCAGAGTGGTAGAAAGGCAGCAGAGAAACCCTGAGGAGAAAGCTGGAAAAGAAAAGAGAGACTCAGGGCCAGCTACAGTCAAGGAGAAAAAACCCAGCACAGGAGAGCGAGGCCCAAGGGAGAAGGGGAAGGGTCTGGGGAGAAGCTTCAGCCTGAGCTCCAACTTCACCACTACCGAGGAGGTTCCCACGGGAACCAAGGCCCACAGATGTGACGAATGTGGAAAATGCTTCACACGGAGTTCAAGCCTTATTCGCCATAAAATAATCCACACTGGAGAGAAGCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGTCTTAACTCAAACCTCGTCCTGCATCAGCGCATCCACACAGGAGAGAAGCCTCATGAATGTAACGAGTGTGGCAAAGCCTTCAGTCACAGTTCAAATCTCATTCTGCATCAGCGAATCCACTCTGGGGAGAAACCCTATGAATGTAACGAGTGTGGGAAGGCCTTCAGCCAGAGCTCAGACCTCACTAAGCATCAGAGAATCCACACGGGAGAAAAACCCTACGAATGTAGTGAGTGCGGAAAAGCTTTCAACCGAAATTCATACCTTATTTTGCACCGGAGAATTCACACCCGAGAAAAGCCCTATAAGTGCACGAAGTGTGGCAAGGCCTTCACCCGGAGCTCAACCCTTACCCTGCATCACAGAATCCACACCAGAGAGCGAGCCTCAGAGTACAGCCCGGCCTCCCTCGACACGTTTGGAGCATTCCTGAAAACCTGTGTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016757:ENSBTAT00000029042:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=NA C2=0.387
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGATCGAGGACATGGCC
R:
GCTCTCCTGTGCTGGGTTTTT
Band lengths:
355-2321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]