RnoINT0169018 @ rn6
Intron Retention
Gene
ENSRNOG00000001335 | Zkscan1
Description
zinc finger with KRAB and SCAN domains 1 [Source:RGD Symbol;Acc:1560616]
Coordinates
chr12:19242179-19247387:+
Coord C1 exon
chr12:19242179-19242305
Coord A exon
chr12:19242306-19245231
Coord C2 exon
chr12:19245232-19247387
Length
2926 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTTTCTGTTTATCATGTCAGGTT
3' ss Score
9.01
Exon sequences
Seq C1 exon
GCAATGGTGAAGATCGAGGACATGGCCGTGTCCCTCATCCTGGAGGAATGGGGATGTCAGAACCTGGCTCGGAGGAATCTCAATAGGGACAGCAGGCAGATGAATTTGGGAACTGTGTTTTCCCAGG
Seq A exon
GTAAGACTAATGCAGAATTCCTGTCTGCTAAGATTTTTTTTGCTTCTGTGCTGGTTAGTAAGGGAAAACATTTATGTTTGTTGAGTTCCAAAGGCATAGCACTCCAACTCCCTGATTCTTGGAAGGTTTGGTATCTCTAGGTAATTTCTGCTGTCTGAAATCAGAAATCAGCTCTTCTGCTCTGAGTCTCTCTCAGTTCCCCAGCCATTCAGTTACCTGGGAGGATTCTTTCTGTTCTGGTGAATTCTATTTCAGCTTCTCTGTCAGATGAAATCTCCTTCTTCTAGTAGAGGTAGCCAGGCAAACTGACCACCAGTCCAATTCCAGCCTTTCTTTTTTTAAACCATGTTCTAGACCTAACAAGACATCCCTGATCCTTGGATGTCTGTCTTTATCCTGTTAGAGATTGCTCAATGTGCACTTTGTGACTCCATAGCCTTGCACTTGGTTCCCAGGCCTAAACCCAATGGTGATCTTCTATGAAGAACTCTTGGTGCTGAGAGTGTTATGAAAAATGAAGTAATTCAAAGGGCATCAGCTAGATAAAATGTCCTACCTAGCCAATGAAACTGTTGCATGGGTCTCTCCTAGATCTTAAGTCCTAGGACACAGTGCCACCAAGGAGCCCAAAGATGTGTGCAGTAGTAGAAAATTTCACCTTGGGTGGGCAGAGGGAGGATGAACAACGCCAACGCGGGCATGAAGAAGCTGGGTCTTGGTTTAAAAACTGACATAAAGGGGAAGATGTTTTTTGGGTTCTTGTGCTTTATATTGAATAGAAATTAAGAACTGGTCTTCACTTCTAAGCTGTCACTGCTATAACCTTTGAAGGGGGAAAGAAACATGAAATAAACACTCTTAGGAATTGTCCGGCTGGTCAAGGACCTTTGTTTGGAATTCAGAAGAAGTAGAGCAGCCCTGTCCTCTCTGCAGTTGGCCCAGTGGCCATGATGACCCCATCCCTAAGTCAAAGATGAGCTACTTTTACCACTGCCTGTTCCTCTAGTCACACAGTCACGAGCCCACTAAACAGGGTGGCGCAGACCCTCCCAGAGTTGTCACTTAAAAGCAAAACGCAGGGCCAGTGAGGTGGCTTAGTAGATATGGACACTTGCTGCCAAGCCTAGCAACCAGTTTGTCCCCAGGACCCATGCATTGAAAGGAGGGAGTTTAGTCTCATAGGTTGTATTCTAGCCTCCACACATGCATCATGGTTCACACACACACACACACACACACACACACACACACACACACACACACACACACTCACAAATAATAAATAAATATTTCAAGATTTTGTTTCGGGGCATGAGAGACGGCTCAGTAGTGAAGAGCACTGACTGCTCTGCCAGAGGACCCATGTCCATTTGCCAACACCAATTTGGTATCTTACAACCACCTTTAACTCCAGATCCAGGAGATCCAGTGCCCTTCTCTGACCTCTGCAGGCAAAACACCCATACACACAAAAAATCTTTTTTAATTGTTGGATTTTGTTTATTTGTTTGTTTTAGAAAGTAGGTTTCTCTCTGTAGCTCTGACTATCCTGGAACTTCTTTTGTAAACCAGGCTGGCCTTGAACTCACTGAGGTCCAACTGCCTTTGGCTCCCAAGCACTTGAGGTCAAAGGTGTGTGCCACCACGCCCAGGAGGTTTGGGTTGGTTTTGTTTTGTTTTCTTCAATAGTGACACATGGGGTATAGCAATGTATGGTAAAATTTAAATTTCAGTAATAATTTGGTAATATGCTGGTTGCTAAAATGCAGAGACTTAACTACATTGTAAAATGTTTGCTGGTACTTCTGATTACAGTCTCAGGGATTGTTTCTTTCCTGTGAGCCTCAACTGTCAGTTGATGAAAATGATGTCTATTTTTGGTAGTGAATCCCCAGGTAGCTCCTTCGTCCCTTCCCTGTTACATGAGCTCTGGTAGCTTTGTGCTGTTCCTGGTGAAAGAAAACTGCTTCCTGTGTCAAGGGCCCTATAATCTACCAGGTGCAGGGTTCCATGTTAACCTGCTAACTATGCCCTTGTTGATAAAATATGACAGAACTGGGAATGTCTGCTTTTCCTTCCTTCTGCTAACAGCACTAACCAATTCCTCAGAATGACTTGCCCATTATCTTTTTGTAAGATGTACAAGTATTTGCTGGAAATGCAACATGACTTATTTCTTATTGCATTTATTTTTGTAACAAGGTCTTGTTGTGTAGCTCTGGCTGGTCTTGAATGGAGATCTGCTTGCCTGTTCCTTACATGCTGGAGTTAATCCTTCAGTGAGACTGGTTTGTTTTTTTTTTTCCTTGACACAGTCTCTCTATGAAGCCCAGGCTTTCCTGGAACTCCATATAGAATGGGCTGGCTTTGAACTCAGGAGATCTCCCTGCTTCTGCCTCCAGAGTATTATGATTAGAGGCATGCACCACAATGCCAAGCTATGACTTGTTAAATATGTTTTCTTTCTAATTAGTTATCAATTGACCACATAATAGAACAATCCCTGAAGCCTCTTAATTCCTTATCCTCTCCTTCCGTAACTTTCTTTTTTCAAGTCCCCACTGCCTGTTTATTCAAATTCTTTTCACTCTTGTTTTCTTTTGAGATAGGTCTCACTATGTAGCCCCAACTGGTCCATCACTAATGATTCTCCTGCCTCAACTATTGAATGCTAGGTGTGCTCCACTCTGAATGCACCCCTCTGCCTGGCCTTCTTTGTACTCTTTACCAATACCATGATATTTTTTTCCACCTCCATTCCAGCTCTTCCTGGTGTTGTTAAATTTTTCCCCTTTTCTGCTTTTATCTTTAATACTATGAAGGGCATTCTCCCAGGAATATAGAAGCTTCATAGTAAATGTCACCGTGTGAACACCTGCATTTAGAAGAAAATGATGCAATTTGTATTTTCTGTTTATCATGTCAG
Seq C2 exon
GTTCTGAGAACAGGAATGGAAGTGAGTCAACCTCAAAAGCTGAAGTCAAAGGAGATTCCACCTCACACGGGGAGATAGCAGGAAGATTCCAGAAAGAGTTTGGAGAGAAGCGGGAACAGCAGGGCAGAGTAATTGAAAGGCAACAGAAAAATCCTGAAGAGAAAACTGGCAAAGAGAAGAAAGCCCCTGGGCCACCTACAGCCAAGGAAAAGAAGCCCACCACAGGAGAGAGGGGCCCAAGGGAGAAGGGTAAAGGTTTGGGAAGAAGCTTCAGCCTGAGTGCAAACTTTAATAATACTCCCGAGGAGATTCCATCAGGAGCAAAGACTCATAGATGTGATGAGTGTGGGAAATGTTTCACAAGAAGCTCAAGCCTTATCCGCCATAAAATCATCCACACTGGAGAGAAACCCTACGAATGTAATGAGTGTGGGAAAGCCTTCAGTCTCAATTCAAACCTTGTCCTACATCAGCGAATCCACACAGGAGAGAAACCGCATGAATGTAACGAGTGTGGCAAAGCCTTCAGTCATAGCTCGAATCTTATCCTGCACCAGCGCATCCACTCTGGAGAGAAGCCCTACGAATGTAATGAGTGTGGCAAAGCCTTCAGCCAGAGCTCAGACCTCACGAAGCACCAGAGAATCCATACGGGGGAGAAGCCCTATGAATGTAGTGAATGTGGAAAAGCTTTCAACCGAAACTCATACCTTATTTTGCACCGGAGAATTCATACCCGAGAAAAGCCCTACAAGTGCACTAAGTGTGGCAAGGCCTTCACCCGAAGCTCAACCCTCACACTGCACCATAGAATCCATGCCAGAGAAAGAGCATCAGAATACAGCCCAGCCTCTCTGGATACCTTTGGAGCATTCCTGAAAAGTTGTGTGTAAAGCAGGAGTGTGTCATCAAGCCATTTCCCCCCTTTTGTTTCTGGAATTATGTCAGACCTACGTGCCCATTGAGGGAAAAGTAATAGCACCATCCAATTGTTTGAGAAGTCACACTTCAGGATCCCTGAGAAGTACATCAACAGTGTCCTGTAATTCTTATAGTCCTTGCAAGGGAAAGCTGGTCTTGTGGGTGTTCTTCCACTCAAGATAAAAGTGCACACACAATGTGTGTAAAACGTCAAGCTTTCTAGTAATGGGTATAACTTTAAGATTTGCTTCCCAGCAACCACACCATGTAGTTGATGAGTCAAGATTAGCTCTGTGAATATTAAACTGAAGTTAAGAAGCCACTTGCTGCAAACAAGCCTGTTATTTCTCAATGAAGAGAGATAGTTGATACAAAAACTACATTGGGACATGCTGCTCAAGCAAGGTATATATCCAGAAGGTTGTATATCCGATCACTGGTAGCCTGCCAAAGCTATAGAAATCTAGGACTGTGCTGGTCAGAATCAAACCAAAGATTTCTATCTCTTTCTGAAAGAGGGCATATGTACCAGTTTGTAGTTCCAAGGACTGTAACAAATATGGAGAGCCCTGCACTCATCAGTGAGATCAGTCCTACCTGCGGGAATAGCAATTCAAGATGCTTCTCTTCCTCTTCAACATCCCTAAAGCACTCTAGCACTCCTAAATGCACTCTCCACAAATTAGCACTTGATTGTATGGCATCTTTTAATCCTTCATAGTTCAGTGTTGGAAGCTTTTATCAGTCACCACCACCTCCCCCAAAAAAGATGCTTCAGTTGTGAAGAAATATAGTTCTGTTCCTGACAGCACAGCACTGGATGTCGTACTGAACACACACAAGGCACTCCTGATGGACTTCTAACAGGACTATCATATTTGTGCTGGAGTCTGTGAATCATGTGAGTACCTGAACTGTGGTACCTCCAGACCTATAGGCCATACTGTACCGTATCCTAGGTCAGTGTTATTTTTGTCCCAAATAAGCAGAAGCTTGGTTAACCACCTGCAGAGACTGCAAATGTGGATCAGCAAGCAGATGCCACAGAATGTCAGAAACGCTTCCTGTCGTCCACTCACAGAAGAAAACCGTGAACACTAACTATAAAGTTTTGTTTGTATGACATCATTCCACGGCAAAGATCTTGTTCCTGGCCAGAGTTCTTTTCAGTCAGCTGCTGAATAGTGGTGTTTTGAGCACTTGCTGAGTTGTTCAAAACTTAGCTAATGCTGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001335:ENSRNOT00000045379:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=NA C2=0.394
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]