HsaEX0072819 @ hg38
Exon Skipping
Gene
ENSG00000106261 | ZKSCAN1
Description
zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:HGNC:13101]
Coordinates
chr7:100030249-100041689:+
Coord C1 exon
chr7:100030249-100030375
Coord A exon
chr7:100030851-100031100
Coord C2 exon
chr7:100033305-100041689
Length
250 bp
Sequences
Splice sites
3' ss Seq
CTTCCATCCTGTGTGATTAGTGT
3' ss Score
6.55
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GCAATGGTGAAGATCGAGGACATGGCTGTGTCCCTCATTCTGGAGGAATGGGGATGTCAGAATCTGGCTCGGAGGAATCTCAGTAGGGACAACAGGCAGGAGAATTATGGGAGCGCATTTCCCCAGG
Seq A exon
TGTGATTCCAATACACTGCTTTGTGTAATTCCACGAACTTGCACCTGGACTGTCCTTGTGATGAGGATTCCCAGCTTCCAAACTTAATGGTGATTTTCTATGAAGAGCTCTGGGTCCTGGATGTGTAGTAAGAACGAGGAAGTTCAAGAGGCATCAGCCAGATAAGACAAGGTGACACTGTTGGCAGACATTTCCATTTGTCTCTGCTGGATCTTAACCCCTCAGGACAGTGCTGCAAAGAAGCCCTCAC
Seq C2 exon
GTGGTGAAAACAGGAATGAGAACGAGGAGTCAACCTCAAAGGCTGAAACCTCGGAAGATTCAGCATCACGCGGGGAGACAACAGGAAGATCCCAGAAAGAGTTTGGAGAGAAACGTGACCAGGAGGGCAAAACAGGAGAAAGACAGCAGAAAAACCCTGAGGAGAAAACCAGGAAAGAGAAAAGAGATTCAGGGCCAGCTATAGGAAAGGACAAAAAAACCATCACAGGAGAGAGAGGTCCAAGGGAGAAGGGGAAAGGATTGGGAAGAAGCTTCAGTCTGAGCTCCAACTTCACCACCCCTGAAGAAGTTCCCACGGGAACAAAGTCTCACAGATGTGATGAATGTGGTAAATGCTTCACGAGAAGTTCAAGCCTTATCCGCCATAAAATAATCCACACTGGAGAAAAGCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGTCTTAACTCCAACCTTGTCCTGCATCAGAGGATCCACACAGGAGAGAAACCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106261_MULTIEX1-9/9=8-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.616 A=1.000 C2=0.387
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NO
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
ENST00000324306fB8025
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGGGACAACAGGCAGGAG
R:
CCCTTGGACCTCTCTCTCCTG
Band lengths:
292-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development