HsaEX0072988 @ hg19
Exon Skipping
Gene
ENSG00000090612 | ZNF10
Description
zinc finger protein 268 [Source:HGNC Symbol;Acc:13061]
Coordinates
chr12:133727614-133736051:+
Coord C1 exon
chr12:133727614-133727740
Coord A exon
chr12:133728395-133728490
Coord C2 exon
chr12:133732089-133736051
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTCACTGTGAACAGGTT
3' ss Score
8.72
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
ACACTGGTGACCTTCAAGGATGTATTTGTGGACTTCACCAGGGAGGAGTGGAAGCTGCTGGACACTGCTCAGCAGATCGTGTACAGAAATGTGATGCTGGAGAACTATAAGAACCTGGTTTCCTTGG
Seq A exon
GTTATCAGCTTACTAAGCCAGATGTGATCCTCCGGTTGGAGAAGGGAGAAGAGCCCTGGCTGGTGGAGAGAGAAATTCACCAAGAGACCCATCCTG
Seq C2 exon
ATTCAGAGACTGCATTTGAAATCAAATCATCAGTTTCCAGCAGGAGCATTTTTAAAGATAAGCAATCCTGTGACATTAAAATGGAAGGAATGGCAAGGAATGATCTCTGGTATTTGTCATTAGAAGAAGTCTGGAAATGTAGAGACCAGTTAGACAAGTATCAGGAAAACCCAGAGAGACATTTGAGGCAAGTGGCATTCACCCAAAAGAAAGTACTTACTCAGGAGAGAGTCTCTGAAAGTGGTAAATATGGGGGAAACTGTCTTCTTCCTGCTCAGCTAGTACTGAGAGAGTATTTCCATAAACGTGACTCACATACTAAAAGTTTAAAACATGATTTAGTTCTTAATGGTCATCAGGACAGTTGTGCAAGTAACAGTAATGAATGTGGTCAAACTTTCTGTCAAAACATTCACCTTATTCAGTTTGCAAGAACTCACACAGGTGATAAATCCTACAAATGCCCTGATAATGACAACTCTCTTACTCATGGTTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090612-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.152 C2=0.038
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3),PF124393=GDE_N=PU(29.9=88.4)
A:
PF0135222=KRAB=PD(0.1=0.0),PF124393=GDE_N=FE(25.2=100)
C2:
PF124393=GDE_N=PD(44.1=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGTGACCTTCAAGGATGT
R:
TGCTCCTGCTGGAAACTGATG
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)