HsaEX0073255 @ hg19
Exon Skipping
Gene
ENSG00000196150 | ZNF250
Description
zinc finger protein 250 [Source:HGNC Symbol;Acc:13044]
Coordinates
chr8:146102342-146115079:-
Coord C1 exon
chr8:146114966-146115079
Coord A exon
chr8:146112225-146112287
Coord C2 exon
chr8:146102342-146108221
Length
63 bp
Sequences
Splice sites
3' ss Seq
ACTCGCTGTTTTTTTTCCAGACA
3' ss Score
9.95
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACTTCCAGGATCCAAGCCTGACATAATCTCCCAGCTGGAGCGAGGGGAAGATCCCTGGGTCCTGGACAGGAAGGGGGCTAAGAAGAGCCAGGGCCTGTGGAGTGACTACTCAG
Seq A exon
ACAACCTCAAATATGACCACACTACAGCCTGTACACAACAAGACAGTTTATCTTGTCCATGGG
Seq C2 exon
AATGTGAAACCAAGGGAGAGAGTCAAAATACAGACTTGAGTCCGAAGCCATTAATTTCAGAGCAAACAGTGATTCTGGGGAAAACACCCTTGGGGAGGATTGATCAAGAAAATAATGAAACAAAGCAAAGCTTCTGTCTGAGTCCAAACTCTGTTGACCACCGTGAAGTTCAGGTCTTAAGCCAAAGCATGCCACTCACTCCGCACCAGGCAGTGCCTAGTGGAGAGAGGCCCTACATGTGTGTTGAGTGTGGGAAGTGCTTTGGCCGGAGTTCCCACCTCCTTCAGCATCAGCGTATCCACACTGGAGAGAAGCCCTATGTGTGCAGTGTATGTGGGAAGGCCTTCAGCCAGAGCTCAGTCCTTAGTAAACACAGGAGAATTCACACAGGTGAGAAGCCCTATGAGTGTAATGAGTGTGGAAAAGCCTTTAGAGTGAGCTCAGATCTTGCTCAGCATCACAAGATACATACAGGAGAGAAGCCTCACGAATGTCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196150_MULTIEX1-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.110 C2=0.141
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGAAGAGCCAGGGCCTGT
R:
TCAATCCTCCCCAAGGGTGTT
Band lengths:
139-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)