HsaEX0073257 @ hg19
Exon Skipping
Gene
ENSG00000196150 | ZNF250
Description
zinc finger protein 250 [Source:HGNC Symbol;Acc:13044]
Coordinates
chr8:146101922-146112287:-
Coord C1 exon
chr8:146112225-146112287
Coord A exon
chr8:146105750-146105843
Coord C2 exon
chr8:146101922-146102046
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTTGCCCTTATGACCTGCAGATC
3' ss Score
8.82
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
ACAACCTCAAATATGACCACACTACAGCCTGTACACAACAAGACAGTTTATCTTGTCCATGGG
Seq A exon
ATCCTGTGCCCCAGAAACCGTGAGATGTCTCAATTCCCATGCAGGCAAAGGAGGGGAGCTTCACACTCAGCAGACCTCATAGCTGTTACACCAA
Seq C2 exon
TGGCTTCTGCTGTGGCTATCCCATGTCCGGTGTGAGGAGACAGTGGTATGACTCATCCCTTTGTGTCCGGAATTGGTGGGTTCTTGGTCTCACTGACGTCAAGAATGAAGCTGCGGACCCTCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196150_MULTIEX1-4/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.857 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCACACTACAGCCTGTACA
R:
GGTCCGCAGCTTCATTCTTGA
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)