HsaEX0073278 @ hg19
Exon Skipping
Gene
ENSG00000254004 | ZNF260
Description
zinc finger protein 260 [Source:HGNC Symbol;Acc:13499]
Coordinates
chr19:37001597-37019562:-
Coord C1 exon
chr19:37019121-37019562
Coord A exon
chr19:37016057-37016275
Coord C2 exon
chr19:37001597-37006601
Length
219 bp
Sequences
Splice sites
3' ss Seq
TACTTTGTTCTTTTTCACAGGCC
3' ss Score
10.35
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
CCGGCTTGAGCCCAGCCAAAGGGATTACCCTCATTCCCGAACCGTGTCTGAGAGTCTCCTGGGGTTCCTGGCTTAGTATCGCACCGTGGCTGTTACATAAAGTCAGCACAGCGTGTTTAAGCTGATGTTACACCACTACCCAATCCCAGGGATAGAGTAAACTAAGACTAAGGCCTTACACCCCTGCCCCGGCCAGGGAGACAGTCCCACAAGCTCTGGCGGAGGAAAAGTTCGCGCGAAAAGCTGACTCAAACCGCTGAACCTTCTGGGAAATGTAGTCTACCCTCAAAAGAGTGGCACGGAGGACGGGCCAAGATCTCTCGATTCCGTCCGGTTCTGAGTCGGGGCCTGGCCCAGCCCAGGAGACCTCTGGGAGCGCTGCCCGCGGAAGGAGTGCGCAGGCGCGGAATCTCCGACTTGCCATGGTCGTCTTTGTCTGCCG
Seq A exon
GCCTGCTTCCTTGTATATCCACAGGAGCTGCAAAACCTCTTAGAGTTCTAAGGGCGCTCCCTGAATTTTGGGATGCTGCTTTGTTCCCCAACCATAACATCCAAGTCCAGTGTCATTTTTCTGCTCACAAGTTTAAAGTCAGCACTTAAAAGAACAGCAACAGATGATTGAGAAAGAAATGTAAAGAAGGTTCTCTTTGTGTGAGTAAGCAAGAACCTG
Seq C2 exon
AAGAAGCCTGGGAAGTTTATAAACAGATAAAGACGCAACATGAAAGACTTGTAAGTTAAGTCTCATCTTTCTCTGTGAAAAGACAGACTGAGGGAAAATTTAGGAAACAAAGTATTTCCTCTGAACAGTCATTGATTCTTCAAGACTACCCTTCTGTGTATGGAACTCAGTTTAAAAGAATTTGAAACCTAATTTATATACAATCTATACCTAAATATGGGAGAAGCTATATAAGAACCATTAAGAATATAAAGAGAATGTTACATTTTATCCCTTTTTGTAATCATCTCATCTCAGGGTAATCAATGTGAGAAAAGTCTTCCATCATAAATTTAACTTCATTAGATACCTGAGAATTAATATTGAAAATACACCATATGAATTTAGTGAATGTGGGAAAGCTTTCATCCTTATTACATCTTATTTGATACTAGGGAAATCTCCTGATTAAATTCACATGCATGATAGGCATGTTGGAAAGTCTTCAGCATGAATCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254004-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3),PF0013017=C1_1=WD(100=12.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=6.3),PF0041217=LIM=WD(100=12.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACTCAAACCGCTGAAC
R:
TCCCTCAGTCTGTCTTTTCACA
Band lengths:
296-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)