MmuEX0053128 @ mm10
Exon Skipping
Gene
ENSMUSG00000049421 | Zfp260
Description
zinc finger protein 260 [Source:MGI Symbol;Acc:MGI:1347071]
Coordinates
chr7:30094794-30104291:+
Coord C1 exon
chr7:30094794-30095211
Coord A exon
chr7:30099528-30099722
Coord C2 exon
chr7:30104230-30104291
Length
195 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTGTTGTCTGCACAGTCC
3' ss Score
8.75
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTGGCCAAGATGGCGTCCTCTCCCGTAAAACCCAGAGGATTGCGCCTTACTGGGAATCTCGCCCTGGAGGCAAGGAAAAGCCTATTCTGTGAGTTTAAGCTGCACTCATTACACACCTTGGCACACCATTGTCCTTTGCGGTAACACAGTGTAAAAGTGGTAGTATCTGAGTTCCAACCTTTTACTACTTATCCACTGGGAAAAGTTCTCGGGAGAGTGGAGGGGAAATTAACTAGAACCCCTGAGACTTCTGGGAAATGTAGTTCACAGTTAAAAAGAGAGCGAAAGAGAGAGACTAGAATGGAAAAAGATCCTCTAGTTCAGAGCCCTGGTGGGCAGAGACCTCTGGGAGTGCTAGCTCACTGAAGGAGTGCGCAGGCGCAGGCTTCGTGGCTCGCCATCGTCGCCTTTGTCTGG
Seq A exon
TCCCCCTTCCTGTGTACTCCCGAGACCGGAAGTTTCTCTACCCTCCAGAGCTCTCTTGAGTGCTGAGGCTTCGGTCTGACTTGCAGCCGCTGCAGAGATAACGCCTGAGTCCTGAATTGCTTTACCTATTGCAAGTTAAAAGTCTACAGTTCAAACAAAAACCCTGACTGTCTGAGAAGCAGCATCAATCTGCAG
Seq C2 exon
AAGCGGCCTCTGGAGTTATACACAGATAAGGACACAGGATGAAAGACGTGTGAGTTAAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049421-'1-8,'1-5,2-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=6.6),PF0009621=zf-C2H2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF0136316=FYVE=WD(100=18.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGGGAAAAGTTCTCGGG
R:
TGTATAACTCCAGAGGCCGCT
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types