HsaEX0073278 @ hg38
Exon Skipping
Gene
ENSG00000254004 | ZNF260
Description
zinc finger protein 260 [Source:HGNC Symbol;Acc:HGNC:13499]
Coordinates
chr19:36510695-36528660:-
Coord C1 exon
chr19:36528219-36528660
Coord A exon
chr19:36525155-36525373
Coord C2 exon
chr19:36510695-36515699
Length
219 bp
Sequences
Splice sites
3' ss Seq
TACTTTGTTCTTTTTCACAGGCC
3' ss Score
10.35
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
CCGGCTTGAGCCCAGCCAAAGGGATTACCCTCATTCCCGAACCGTGTCTGAGAGTCTCCTGGGGTTCCTGGCTTAGTATCGCACCGTGGCTGTTACATAAAGTCAGCACAGCGTGTTTAAGCTGATGTTACACCACTACCCAATCCCAGGGATAGAGTAAACTAAGACTAAGGCCTTACACCCCTGCCCCGGCCAGGGAGACAGTCCCACAAGCTCTGGCGGAGGAAAAGTTCGCGCGAAAAGCTGACTCAAACCGCTGAACCTTCTGGGAAATGTAGTCTACCCTCAAAAGAGTGGCACGGAGGACGGGCCAAGATCTCTCGATTCCGTCCGGTTCTGAGTCGGGGCCTGGCCCAGCCCAGGAGACCTCTGGGAGCGCTGCCCGCGGAAGGAGTGCGCAGGCGCGGAATCTCCGACTTGCCATGGTCGTCTTTGTCTGCCG
Seq A exon
GCCTGCTTCCTTGTATATCCACAGGAGCTGCAAAACCTCTTAGAGTTCTAAGGGCGCTCCCTGAATTTTGGGATGCTGCTTTGTTCCCCAACCATAACATCCAAGTCCAGTGTCATTTTTCTGCTCACAAGTTTAAAGTCAGCACTTAAAAGAACAGCAACAGATGATTGAGAAAGAAATGTAAAGAAGGTTCTCTTTGTGTGAGTAAGCAAGAACCTG
Seq C2 exon
AAGAAGCCTGGGAAGTTTATAAACAGATAAAGACGCAACATGAAAGACTTGTAAGTTAAGTCTCATCTTTCTCTGTGAAAAGACAGACTGAGGGAAAATTTAGGAAACAAAGTATTTCCTCTGAACAGTCATTGATTCTTCAAGACTACCCTTCTGTGTATGGAACTCAGTTTAAAAGAATTTGAAACCTAATTTATATACAATCTATACCTAAATATGGGAGAAGCTATATAAGAACCATTAAGAATATAAAGAGAATGTTACATTTTATCCCTTTTTGTAATCATCTCATCTCAGGGTAATCAATGTGAGAAAAGTCTTCCATCATAAATTTAACTTCATTAGATACCTGAGAATTAATATTGAAAATACACCATATGAATTTAGTGAATGTGGGAAAGCTTTCATCCTTATTACATCTTATTTGATACTAGGGAAATCTCCTGATTAAATTCACATGCATGATAGGCATGTTGGAAAGTCTTCAGCATGAATCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254004-'0-9,'0-1,4-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACTCAAACCGCTGAAC
R:
TCCCTCAGTCTGTCTTTTCACA
Band lengths:
296-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development