HsaEX0073389 @ hg19
Exon Skipping
Gene
ENSG00000131845 | ZNF304
Description
zinc finger protein 304 [Source:HGNC Symbol;Acc:13505]
Coordinates
chr19:57862645-57865219:+
Coord C1 exon
chr19:57862645-57863065
Coord A exon
chr19:57864023-57864103
Coord C2 exon
chr19:57865093-57865219
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTCTCTGGCTTTCAGGTT
3' ss Score
10.35
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
TTCCTATGCCCGGTCCGTGCATTCTGGTTGTGAAGGCTGAGTTCTAGAGATCGGGTCGGCTTTCTACGCGGCTCTCGTGGAACCTAGCAAAGAAAGACAGTGAAGACTGCAGGACCTTCCTTCGCGCTTTTGTTACAATCCATGACCCCTGTCGTGGGACGGGCGGCCTCTCGCGGAGGTGTCTGCCGGGGCTGGGCTCTTACCGAGGCCTCCACACACGTCCTCTTGTCCTTGTCTCCCCCAGAAGCAGCCGCCTTAGTCTTGTGAGCGTTTTTACACCGGGTAGATTGAGACTTGGAGTGCTACACTCAGCCCGAGGGCGTCCAGCGCGGTGGAGGCGTGGGGTTTCGGCTGAGCCCACAGGGCACAGACTGTTCATCCGCTTCTCATGGCAGCGGCGGTGCTGATGGACCGGGTTCAG
Seq A exon
GTTGAGAACAGACTGTGAGCATGAGGGAGCAGCTACTGCAGTAGTGTTGATGGTGTCTGGTCTAGAGGTGTGGCTGTGGAG
Seq C2 exon
AGTTGTGTGACCTTCGAGGATGTGTTCGTGTACTTCTCTCGGGAGGAGTGGGAACTCCTTGAGGAGGCACAGAGATTCCTGTACCGTGATGTGATGCTGGAGAACTTTGCACTTGTGGCTACACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131845_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATCCGCTTCTCATGGCA
R:
GCCACAAGTGCAAAGTTCTCC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)