HsaINT0186823 @ hg19
Intron Retention
Gene
ENSG00000131845 | ZNF304
Description
zinc finger protein 304 [Source:HGNC Symbol;Acc:13505]
Coordinates
chr19:57862645-57865219:+
Coord C1 exon
chr19:57862645-57863065
Coord A exon
chr19:57863066-57865092
Coord C2 exon
chr19:57865093-57865219
Length
2027 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AGCTGTACTTATCATGGCAGAGT
3' ss Score
4.61
Exon sequences
Seq C1 exon
TTCCTATGCCCGGTCCGTGCATTCTGGTTGTGAAGGCTGAGTTCTAGAGATCGGGTCGGCTTTCTACGCGGCTCTCGTGGAACCTAGCAAAGAAAGACAGTGAAGACTGCAGGACCTTCCTTCGCGCTTTTGTTACAATCCATGACCCCTGTCGTGGGACGGGCGGCCTCTCGCGGAGGTGTCTGCCGGGGCTGGGCTCTTACCGAGGCCTCCACACACGTCCTCTTGTCCTTGTCTCCCCCAGAAGCAGCCGCCTTAGTCTTGTGAGCGTTTTTACACCGGGTAGATTGAGACTTGGAGTGCTACACTCAGCCCGAGGGCGTCCAGCGCGGTGGAGGCGTGGGGTTTCGGCTGAGCCCACAGGGCACAGACTGTTCATCCGCTTCTCATGGCAGCGGCGGTGCTGATGGACCGGGTTCAG
Seq A exon
GTGAGTGGGGGCATCCCTCAAGCGCACCCCGGCCTGGTTGGTGTGTCCTGGGATGTTCGCTCTCATCGCGCACTTCAGGGTGCTCACTCCGTCGCATTATGTGGAGGGGTTCCGCTCCCCTCATCAGTGGCATAAGGTGTGGAACGGACTCGAAGGCGCAGGGGCAGTTCGTACAAATGCATGCATGGAGAGGAGAATGAGTTTGGGGAGTTCCGGGAACTCTCTGTGCCTGGTGAGAACAGGGACTAGGGGGTCAGAGGTAGGCCTGGAATGGCCGCCCGAGGAGCTGGTCCTCTCTTCTGAGGGTGCTGGGAGTCATGCAAGGTTTGGTACAGAGAAGGGAGGTCCTCTGACGCAGTTCTTAAAAGGCTCCCTCTGGCTGCAGAGTGGGTAGACTAGGGATTATAGGGTAGACGGGGAGATCAAGATGAAGTCTACTGAAATAGTCCAGGTGAGCGTTGATGGTCTGGGCCAGAGTGGTGGCAGCAGAGGTTAGAGAATGTATGGGTTTTGGGTTTTGTATGTATTTTATAAGGAAGGCTGACCAGATTCTCTGATGAGACATAGTGATGATATCCTGGGATTCTTCACATGACTGTCTTCACTTGAGACAGGGGGCAGTGAATGGAGGTCATTTCTAGTTTAGTGTCCTGAATCCAGGCCATGAGTTGTATGGAGTTATGTGGAGAAGTCCCCACCTGGCGACCAATGGGATGAGTACTGCAAAAGTATATCAGACCTAGGAACAGGTACGCTCAAATGCTTGTAGGATTGAGTTTGGAGCGCTCAGGGAATCTCAGGTCTTAATTACCTTTGTTGGAAACAGGTATCAGAGGAAGGAGTTAGGCAGGAATGGCTGGCCGAGGTGTCTTGAGTGTGGTAAAAGTCGTGGGAGATTTGGAGCAGAGGAGGGAGATGATCTGACTCAGATTTTAACATGCTCTCTCTGGCTTTCAGGTTGAGAACAGACTGTGAGCATGAGGGAGCAGCTACTGCAGTAGTGTTGATGGTGTCTGGTCTAGAGGTGTGGCTGTGGAGGTGAGAGAAGTTGGTAAATTTTCTGTTTTTTAAAGTAGGGTGATTGGATTTTTTGATGCGAAAGGTGAAAGAGAGGAGAGTCGTGGATGACCCTAAGGTTGGTTTGTTTTTGCTGTAGCTGGTAAAATTATGAAAATGCCATCAACTGAGATAGAGAAGTTGGCAGCAGGTATGATTTTTAGTGGTTATATCAGGAGTTAGGCTTTGGTCATGTTTAGGTTAAGAGGTCTCAGTTGTCATCTTAGTTGAGGCCTCAGGAAAACACACAGGTTTTTAGTTCTGGGGAAGGGTTCTGTTGAAGAAGTTGAAAAAAATGGTGGCCAGTGTGTGGAGTGGGATGGGGTATCTTCAAATCATGGTGGTAATGCTGTTATTCAGTAAGAAAGTTGAAACTGGACACTGAGAGAAAACTGGGTCTGTTGCTTAGGCACCTGGACGGCAGTGGTGGATAGTGTGAAGACGCGAGCGCTTCCTGGACACTGCTTGCAGAGTGGCATGGGGGATGAGGGATGTCATGGAGGTGCATATGGCATGGGCCAGTGGCGGTGGGGATCTCAGATGTGAGGAAGGTGTAGTCCAAAGAGTAATGAGCACGTTGGGAGGAGTGTGAACTGATGCCCTTAAGACTCTAGTATTGGCAGCTCATGGGAGAAGATGGAGCTGAAGTTTGGTTGTGTTTAGAGGCATCGTCTGGACAACACCAGGAGAACTGGTTGGTAGGCGAGTATTTGGGACCCTTCATGCCAGACCCAGAGTTGAGACAGCATCTGTCTGCACACTTGCCTGGTTCTGCTCTGGGCTGGACACAGTGGTGAGAGGGACATGAGGAGAGAGCAGACACTAGTGGTGCCAAGGTCTGTTATCTCCTCTTAGTTGGGAGGCTGGGGAGGCGAGGGACTAGAGAGTGGGTGTGTGAGTGTGTAGACTGGGGAGGAGGGGGTTCTGGGGAGAGATGCTGACTGTGGACTCAGCTGTACTTATCATGGCAG
Seq C2 exon
AGTTGTGTGACCTTCGAGGATGTGTTCGTGTACTTCTCTCGGGAGGAGTGGGAACTCCTTGAGGAGGCACAGAGATTCCTGTACCGTGATGTGATGCTGGAGAACTTTGCACTTGTGGCTACACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131845-ZNF304:NM_020657:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)