HsaEX0073510 @ hg19
Exon Skipping
Gene
ENSG00000177932 | ZNF354C
Description
zinc finger protein 354C [Source:HGNC Symbol;Acc:16736]
Coordinates
chr5:178487416-178503572:+
Coord C1 exon
chr5:178487416-178487667
Coord A exon
chr5:178489016-178489096
Coord C2 exon
chr5:178503446-178503572
Length
81 bp
Sequences
Splice sites
3' ss Seq
GACACCTTTTTCCTCTGCAGACC
3' ss Score
11.24
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTTTCGGGGGTTCTCCTGGCTTGGGCCATCCAGGCTTGGCTAGGATTGCCGGCCTGGGGTTGAGGCGCTCGCAGTGGTCTCTTCCGGGCCGGGGTGGATCCGGGCCTCTCCAGCGAGTGGGCGGCGTGCAGCCTCGTCTGGGCTTCTGGGACCAGCCCTACGCGGCTCGGGCCCCTTGGCCACTGGGTCCCGGGGCGCCGTCCGCGAGCGGCCTGGACTGCCGGAGACCCGCGGGAGGGAGCGCCTCGCCAG
Seq A exon
ACCCACCGTGTCCACACTCTGCTCTCCCTGGGCAGGAAGACTGAGGAGGAAGGGATGGCTGTGGATCTGCTGTCTGCTCAG
Seq C2 exon
GAGCCTGTGACATTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGGGCCTTGTACCGGGAGGTGATGCTGGAGAACTACAGCAGCCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177932_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCTGGGCTTCTGGGA
R:
CTCGTCCTGGCTGAAGAACAC
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)