MmuEX0053254 @ mm10
Exon Skipping
Gene
ENSMUSG00000044807 | Zfp354c
Description
zinc finger protein 354C [Source:MGI Symbol;Acc:MGI:1353621]
Coordinates
chr11:50817809-50827690:-
Coord C1 exon
chr11:50827579-50827690
Coord A exon
chr11:50826426-50826510
Coord C2 exon
chr11:50817809-50817935
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTCTTCCCAGGCA
3' ss Score
11.21
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTTTGGGGGGCTCCTGGTGGAGGTGATCCTGACTGTGCTAGGAGAGAGCGTCTGGGGCCGACATCCTCGAGACTGCTCGTGCTGAGAGTGGTGGGAGCGAGCGCCGGCGTCC
Seq A exon
GCATATTTGGTCAGCACTCGGCTCTCCTTTGGCAGAAAAACTAAGAAGGGAAATGGCTGTGGATTTGCTGGCTGCCCGAGGCACA
Seq C2 exon
GAGCCTGTGACCTTCAGGGATGTGGCCGTGTCCTTCAGCCAGGATGAGTGGTTGCACCTGGACCCTGCTCAGAGAAGCCTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044807-'0-9,'0-1,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTAGGAGAGAGCGTCT
R:
CTCCAGCATCACCTCTCGGTA
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types