HsaEX0073510 @ hg38
Exon Skipping
Gene
ENSG00000177932 | ZNF354C
Description
zinc finger protein 354C [Source:HGNC Symbol;Acc:HGNC:16736]
Coordinates
chr5:179060415-179076571:+
Coord C1 exon
chr5:179060415-179060666
Coord A exon
chr5:179062015-179062095
Coord C2 exon
chr5:179076445-179076571
Length
81 bp
Sequences
Splice sites
3' ss Seq
GACACCTTTTTCCTCTGCAGACC
3' ss Score
11.24
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTTTCGGGGGTTCTCCTGGCTTGGGCCATCCAGGCTTGGCTAGGATTGCCGGCCTGGGGTTGAGGCGCTCGCAGTGGTCTCTTCCGGGCCGGGGTGGATCCGGGCCTCTCCAGCGAGTGGGCGGCGTGCAGCCTCGTCTGGGCTTCTGGGACCAGCCCTACGCGGCTCGGGCCCCTTGGCCACTGGGTCCCGGGGCGCCGTCCGCGAGCGGCCTGGACTGCCGGAGACCCGCGGGAGGGAGCGCCTCGCCAG
Seq A exon
ACCCACCGTGTCCACACTCTGCTCTCCCTGGGCAGGAAGACTGAGGAGGAAGGGATGGCTGTGGATCTGCTGTCTGCTCAG
Seq C2 exon
GAGCCTGTGACATTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGGGCCTTGTACCGGGAGGTGATGCTGGAGAACTACAGCAGCCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177932_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCTGGGCTTCTGGGA
R:
CTCGTCCTGGCTGAAGAACAC
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development