HsaEX0073620 @ hg38
Exon Skipping
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:HGNC:20647]
Coordinates
chr19:57933817-57935354:-
Coord C1 exon
chr19:57935284-57935354
Coord A exon
chr19:57935080-57935135
Coord C2 exon
chr19:57933817-57933902
Length
56 bp
Sequences
Splice sites
3' ss Seq
TGTGCCTTCCCTGCCCTCAGGTC
3' ss Score
12.9
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GTGTTTCTGCGGTTTGTGAGGTGAGAGGCGCTGGAGCTATGGGTCCGAACCGCGGTGTCTGAACCCAGAAG
Seq A exon
GTCACCTCATCCTAACCCGAATCCTGAAGCAGCGAGAGAGCGGCGACTGTTCACAG
Seq C2 exon
GCATCATCTGGCTGCAAAGAAGAGAACACACTGTGTTTGAGGGAGGAGGAAGGAGGATCAGAGTTTAAACTCCTGCCATAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724-'1-5,'1-1,3-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTCTGCGGTTTGTGAGG
R:
CTGATCCTCCTTCCTCCTCCC
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development