HsaEX0073620 @ hg19
Exon Skipping
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:20647]
Coordinates
chr19:58441796-58446740:-
Coord C1 exon
chr19:58446529-58446740
Coord A exon
chr19:58446148-58446503
Coord C2 exon
chr19:58441796-58441922
Length
356 bp
Sequences
Splice sites
3' ss Seq
TGTGCCTTCCCTGCCCTCAGGTC
3' ss Score
12.9
5' ss Seq
AAGGTTTCC
5' ss Score
-1.1
Exon sequences
Seq C1 exon
TTTTGGTTAATGTTGGGTGTGTTTCTGCGGTTTGTGAGGTGAGAGGCGCTGGAGCTATGGGTCCGAACCGCGGTGTCTGAACCCAGAAGGTGAAGAGTCCTTCTTGCTGCACAGAGGCAGATCTTAGGCCCCGTAACGGCGCCCGCCGCTCCCGGCAGTGCTTTCCCCGCGTACTCGGGATGGCGGCGGCCGCGCTGAGGCTCCCGGCTCAG
Seq A exon
GTCACCTCATCCTAACCCGAATCCTGAAGCAGCGAGAGAGCGGCGACTGTTCACAGGTCTGCAGCCCGGACCCGGCGTCGGGACACTGAGGCGTTCGCGGGAGAGGTCCTTGTTTCTGACACCTGTGGGATGCGGTGGGGAGAGCGACAGGCACAGGGACCGGCGCGGGCTATGGCCTGGAGGACAGACCCGGGAGGATGGAACCTGGGGTCCACAGGCGCCTGTAGGGAACAACGTGTGAGGCGAAGCTTCTCCTGGAAGAGCAGGCTGGGGGCTGTGTATTCGCTGTGAAGACGCTAGAAGCCATGGAGAGTTTCGAAGAAAGGAGGGATGCGATCCAAGTCCAGGCTTTTAAG
Seq C2 exon
GGCACTGTGGCATTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGAGTCTCCTTAGTGAGGTTCAGAGATGCCTTTACCATGACGTGATGCTGGAGAACTGGGTACTTATATCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724_MULTIEX1-1/4=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTAATGTTGGGTGTGTTTCTGC
R:
CCAGGGAGGATATAAGTACCCAGT
Band lengths:
335-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)