HsaEX0073621 @ hg19
Exon Skipping
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:20647]
Coordinates
chr19:58441796-58446740:-
Coord C1 exon
chr19:58446529-58446740
Coord A exon
chr19:58445185-58445270
Coord C2 exon
chr19:58441796-58441922
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACAGTCCCATTTGTCTGCAGGCA
3' ss Score
8.75
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTTTGGTTAATGTTGGGTGTGTTTCTGCGGTTTGTGAGGTGAGAGGCGCTGGAGCTATGGGTCCGAACCGCGGTGTCTGAACCCAGAAGGTGAAGAGTCCTTCTTGCTGCACAGAGGCAGATCTTAGGCCCCGTAACGGCGCCCGCCGCTCCCGGCAGTGCTTTCCCCGCGTACTCGGGATGGCGGCGGCCGCGCTGAGGCTCCCGGCTCAG
Seq A exon
GCATCATCTGGCTGCAAAGAAGAGAACACACTGTGTTTGAGGGAGGAGGAAGGAGGATCAGAGTTTAAACTCCTGCCATAATGCAG
Seq C2 exon
GGCACTGTGGCATTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGAGTCTCCTTAGTGAGGTTCAGAGATGCCTTTACCATGACGTGATGCTGGAGAACTGGGTACTTATATCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724_MULTIEX1-2/4=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTCTTGCTGCACAGAGG
R:
GACTCCACTCCTCCTGGGAAA
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)