HsaINT0187175 @ hg19
Intron Retention
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:20647]
Coordinates
chr19:58445185-58446740:-
Coord C1 exon
chr19:58446529-58446740
Coord A exon
chr19:58445271-58446528
Coord C2 exon
chr19:58445185-58445270
Length
1258 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ACAGTCCCATTTGTCTGCAGGCA
3' ss Score
8.75
Exon sequences
Seq C1 exon
TTTTGGTTAATGTTGGGTGTGTTTCTGCGGTTTGTGAGGTGAGAGGCGCTGGAGCTATGGGTCCGAACCGCGGTGTCTGAACCCAGAAGGTGAAGAGTCCTTCTTGCTGCACAGAGGCAGATCTTAGGCCCCGTAACGGCGCCCGCCGCTCCCGGCAGTGCTTTCCCCGCGTACTCGGGATGGCGGCGGCCGCGCTGAGGCTCCCGGCTCAG
Seq A exon
GTAATTGTGCCTTCCCTGCCCTCAGGTCACCTCATCCTAACCCGAATCCTGAAGCAGCGAGAGAGCGGCGACTGTTCACAGGTCTGCAGCCCGGACCCGGCGTCGGGACACTGAGGCGTTCGCGGGAGAGGTCCTTGTTTCTGACACCTGTGGGATGCGGTGGGGAGAGCGACAGGCACAGGGACCGGCGCGGGCTATGGCCTGGAGGACAGACCCGGGAGGATGGAACCTGGGGTCCACAGGCGCCTGTAGGGAACAACGTGTGAGGCGAAGCTTCTCCTGGAAGAGCAGGCTGGGGGCTGTGTATTCGCTGTGAAGACGCTAGAAGCCATGGAGAGTTTCGAAGAAAGGAGGGATGCGATCCAAGTCCAGGCTTTTAAGGTTTCCCAAAGGCCAAAGGAAGAACATAGTAGAGGAGATGAGGACCTTAGGGTTCTGGGAGGTTGACTCCTTTGTTGATAGATCACATAGGTGGTAGAGATGACATTTTGCACTGAGACACGCAGGTCAACCAGTCTGAGGTCACCTGGCTCCAGCGATAAGAAAAGGTTCAAGGAGACCTGAGCTTATCAGATCCCCTTTGTAACGTCTGCTTTCCCCTCAGACACTCCTGGCTACAAAAGCACGTAAAGAACCCACTGAGGGGGTCGGGCAAGGTGGCTCCCACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTAACAAAAATACAAAATTAGCCAGGCGTGGTGATGCCGCATGACTGTAATCCCAGCTACTCAGAGGCTAAGGCAGGAGAATTGCTTGAACTCGGGAGGCAGAGGTTGCGGTGAGCCATTGCACTCCGGCCTGGGCAACAAGAGCGAAACTCTGGCTCAAAAAAAGGAACCCACAGAGGGAATTAGAGGGTGTTCCATTCCCTCACTGGCCTTATTCCCCATTCACATGTTCTCTAGCTTGTGATGTCCTGGGACTCTTACTTGCCATTTTTTCAGTCCTTTGATCTGAGAACACTGGAGAAACCCTAAACCCAGAATCCTAAGTCCATGACACAGGATGTATGGAGGTATTCCCATTTCTGTCAACCCATGTAAACATACTTTGAAGGTTAACTACAGAGTTGGTACCAGGTCATGAAATGCTTAGAGGTAAAAATTCGGTGGGGAGGCAAGAGGGCGGCGAGGAGGTGATGTTACCACAGTCCCATTTGTCTGCAG
Seq C2 exon
GCATCATCTGGCTGCAAAGAAGAGAACACACTGTGTTTGAGGGAGGAGGAAGGAGGATCAGAGTTTAAACTCCTGCCATAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724-ZNF418:NM_133460:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTAATGTTGGGTGTGTTTCTG
R:
TGCATTATGGCAGGAGTTTAAACT
Band lengths:
294-1552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)