HsaEX0073623 @ hg19

Exon Skipping

Gene

ENSG00000196724 | ZNF418

Description

zinc finger protein 418 [Source:HGNC Symbol;Acc:20647]

Coordinates

chr19:58436991-58446740:-

Coord C1 exon

chr19:58446529-58446740

Coord A exon

chr19:58441796-58441922

Coord C2 exon

chr19:58436991-58439415

Length

127 bp

Sequences

Splice sites

3' ss Seq

ATCTGTCACCATCATAGCAGGGC

3' ss Score

3.52

5' ss Seq

TGGGTAAGT

5' ss Score

10.24

Exon sequences

Seq C1 exon

TTTTGGTTAATGTTGGGTGTGTTTCTGCGGTTTGTGAGGTGAGAGGCGCTGGAGCTATGGGTCCGAACCGCGGTGTCTGAACCCAGAAGGTGAAGAGTCCTTCTTGCTGCACAGAGGCAGATCTTAGGCCCCGTAACGGCGCCCGCCGCTCCCGGCAGTGCTTTCCCCGCGTACTCGGGATGGCGGCGGCCGCGCTGAGGCTCCCGGCTCAG

Seq A exon

GGCACTGTGGCATTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGAGTCTCCTTAGTGAGGTTCAGAGATGCCTTTACCATGACGTGATGCTGGAGAACTGGGTACTTATATCCTCCCTGG

Seq C2 exon

GTTGTTGGTGTGGATCAGAAGATGAGGAGGCACCTTCTAAGAAGAGCATTTCTATACAAAGAGTGTCTCAGGTCAGCACTCCTGGGGCAGGTGTGTCTCCCAAGAAGGCCCACTCTTGTGAAATGTGTGGCGCGATCTTGGGAGACATTTTGCACTTGGCAGATCATCAGGGGACACATCACAAGCAGAAACTGCACAGGTGTGAGGCATGGGGGAATAAATTGTATGATAGTTCAAACCGTCCGCACCAGAATCAGTACCTTGGAGAGAAACCCTATAGAAGCAGTGTTGAGGAAGCATTGTTTGTGAAGAGGTGTAAGTTCCATGTGTCAGAGGAGTCATCTATCTTCATTCAGAGTGGAAAGGACTTTTTGCCCAGCTCAGGATTACTGCTGCAGGAGGCCACTCACACTGGGGAGAAGTCAAACAGCAAACCTGAGTGTGAGTCTCCCTTTCAGTGGGGAGATACTCATTACAGCTGTGGAGAATGCATGAAACAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000196724_MULTIEX1-4/4=C1-C2

Average complexity

C2*

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show structural model

Features

Disorder rate (Iupred):

C1=NA A=0.000 C2=0.123

Domain overlap (PFAM):

C1:

NA

A:

PF0135222=KRAB=FE(90.3=100)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF0013017=C1_1=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF0013017=C1_1=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1)

Main Inclusion Isoform:

ENSP00000407039