HsaINT0187177 @ hg19
Intron Retention
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:20647]
Coordinates
chr19:58436991-58441922:-
Coord C1 exon
chr19:58441796-58441922
Coord A exon
chr19:58439416-58441795
Coord C2 exon
chr19:58436991-58439415
Length
2380 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CAGCATTTTCTTGCTTTCAGGTT
3' ss Score
9.25
Exon sequences
Seq C1 exon
GGCACTGTGGCATTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGAGTCTCCTTAGTGAGGTTCAGAGATGCCTTTACCATGACGTGATGCTGGAGAACTGGGTACTTATATCCTCCCTGG
Seq A exon
GTAAGTTCCTCACACCCTACCCTATTTCCTGAATAGATCTCTGCCCTTCCCCTTTTCTCCCATTGGCAAGACTGTCTTTTATCATGTCAGGACCATGGGCACAGCTTCCTTCTCCACTTCTCTGGGTAGGTTTTGTGGTTGGTAGGTCTGAGGTTTGTGTACTGCCTTTTCTCCTTGAGCAGTCCCAATACGTGCTTTGCTGCAGACTCTCAGGGAAGGAGTTAGAGTCAGGTGTCTCGTAGTCAATCTAATGCATTTCACCTTGCATGTCCCTGTGTTGCTGTTTGACTTTGTCCAGATCTGAGACTCCTGTGTGTCCAGGTTCTACTTCCTTCCTTTAGCTGACATTACTTGATGCCTGCCTGTGGCAGGAATTGCCATCACTCCCGTTGTCACTGCCTACATAGACCAAAGGCAAGACCCTCCTTAGAAATTCTGTTTTTAGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACAAGGTGAAACCCTGTCTCCACTAAAAAATACAAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGTGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGAGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAGAAATTCTGTTTTTAGTAATTAGTTTCCTTTCCTGTGTGTTGTCATGTTTTGAACCACTGTTGCTGAAAACTACCAGCACATATTGGCAGGAGGAAGAGGATAGGGAGTCCAGTGATGTGGCCTTTGTGACCAGCCAGCATTTCAATTTAATCAGGTGGAAATGGCCTTCCTGGCTCATCACTGTTTGCTGCCACAGAGGCTAGTTGCCCCAGTTCTGCCCTATCTTTGCCTTAGTACTTACATCATCCAGGTTCCATGTACTTCATCATTGTGATGGTGGGATGGAGAGTCCTCAGTGCTGCAGAAGAGGCAGTTGAATCCAGGCTCAGCCTGATGTTCTCAGAGGGAGCCTGTCACTGAGGAGTGGCACCTGGTGGGAGGGCATGAGTTCGAGATTTTCTTCAAATCGTATCAGAAACCTATTCTATTTGACTAGTATTTTTGTGGCCAGTAGGCACTGTTTCTGTCTTTTCCTTTCCATTCTTGAGAGCATCAGATTTGTCAGTTGTACACCTTGTCACTTGTACTCTGATGTCCATCCCCCAACGAATCTTCCAGTCTCTGGACTCCACATCTCACCCATTTATTTTCTCATGTTTACTTCTAGAGTGCTGTCCGATACTGGCATACACATTGTGTATTAGCAAGTGTGTACAAATTGTGTTTTGTTTTTGGTTTTTGTTTTTGTTTTTGAGATGGAGTCTCTCTTTGTCGCCCAGGCTGGAGTACAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGACTACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCCGGCCAAGTGTGTGCAAATTGTTAAACTGTTCTGACCAAGAGCTGTTGTCTTGTAAATCATTTTCTTAGGCCTGGACATAGCCTTCTATATAGCATTAACATGTCATCAGATAATTTCCCGCAGACAAGTGGTTTGCAAAGGAAAGAGTTATACAGCAGGTGCATTGGCTTACACCTGTAATCCCAGCACTTTGGGAGGCCGATGTGGGTGGATTTCTTGAACCTGGGAGTTTGAGACCAGCCTGGGCAACAAGGCGAAACCCCACCTCTACAAAAAGTAGCTGGGCGTATTGGCCTGTGCCTGTGGTCCCAGCTACTGTGGAGGCTGAGGTGGGAGGATCACCTGAGCCCAGGAGACAGAGATTATGCCACTGCACTCTGTGCTGGATGACAGAGTGAGATCCTGTCTCTCAAGAAGAAAAAAAAAATTGTAGACCTTGGCTCAATTCTCTGTGTTGCATGTATGCTAATGCCCTTCATATCATGAGGCCGACATTCTGTGACCTTTATAGCCCAGTAATGATAGCCTCATCTTCCACGTGAAGCCAACTTTCTGTTCCTGCAAATATTTCCATGGAGTAATTCCTTGGTTTGTCAGACACGCTTGTGGGTGGGCTGTGCCTTCCCACCAGAGTTAACTTGAATTCATCAGCATTTTCTTGCTTTCAG
Seq C2 exon
GTTGTTGGTGTGGATCAGAAGATGAGGAGGCACCTTCTAAGAAGAGCATTTCTATACAAAGAGTGTCTCAGGTCAGCACTCCTGGGGCAGGTGTGTCTCCCAAGAAGGCCCACTCTTGTGAAATGTGTGGCGCGATCTTGGGAGACATTTTGCACTTGGCAGATCATCAGGGGACACATCACAAGCAGAAACTGCACAGGTGTGAGGCATGGGGGAATAAATTGTATGATAGTTCAAACCGTCCGCACCAGAATCAGTACCTTGGAGAGAAACCCTATAGAAGCAGTGTTGAGGAAGCATTGTTTGTGAAGAGGTGTAAGTTCCATGTGTCAGAGGAGTCATCTATCTTCATTCAGAGTGGAAAGGACTTTTTGCCCAGCTCAGGATTACTGCTGCAGGAGGCCACTCACACTGGGGAGAAGTCAAACAGCAAACCTGAGTGTGAGTCTCCCTTTCAGTGGGGAGATACTCATTACAGCTGTGGAGAATGCATGAAACATTCTAGCACCAAACACGTATTTGTTCAACAGCAGAGACTTCCCTCTAGAGAGGAATGTTATTGCTGGGAATGTGGGAAATCCTTTAGCAAATATGATAGCGTCAGTAATCATCAGAGAGTTCACACTGGGAAAAGACCTTATGAATGTGGAGAATGTGGGAAATCTTTTAGTCATAAGGGCAGCCTTGTTCAGCATCAGCGAGTTCACACTGGGAAAAGACCTTATGAATGTGGAGAATGTGGGAAATCTTTTAGTCATAAGGGCAGCCTTGTTCAGCATCAGCGAGTTCATACTGGAGAAAGACCTTATGAGTGTGGAGAATGTGGGAAATCTTTTAGTCAAAATGGTACTCTCATTAAACATCAACGAGTTCACACTGGAGAAAGACCTTATGAGTGTGAAGAATGTGGGAAATGTTTTACTCAGAAGGGCAATCTCATTCAACATCAACGAGGTCACACTAGTGAAAGACCTTATGAGTGTGAAGAATGTGGAAAATGTTTTAGTCAAAAGGGCACCCTAACTGAACATCATCGAGTTCACACTAGAGAACGACCTTATGAGTGTGGAGAATGTGGGAAATCTTTTAGTCGAAAGGGACACCTTAGGAACCATCAGCGAGGTCACACTGGAGAAAGACCTTACGAGTGTGGAGAATGTGGGAAATCTTTTAGTCGAAAGGGCAACCTCATTCAGCATCAGCGAAGCCACACTGGAGAAAGGCCTTATGAGTGTAGAGAGTGTAGGAAATTATTTAGGGGCAAGTCCCACCTCATTGAACACCAGAGAGTTCACACTGGAGAAAGGCCATATGAATGTAATGAATGTGGGAAATCATTTCAAGACAGCTCTGGGTTTCGTGTTCATCAGAGAGTTCACACTGGAGAAAAACCGTTTGAGTGTAGTGAATGTGGGAAGTCATTTCCTCAAAGCTGTTCCCTCCTTCGACATCGGAGAGTTCATACTGGAGAAAGGCCTTATGAATGTGGAGAATGTGGAAAGTCATTTCATCAGAGCTCTTCCCTCCTTCGACATCAGAAAACTCACACTGCAGAAAGACCTTATGAGTGCAGAGAATGTGGGAAATTCTTCTCCAGTCTCCTTGAACACAGGAGAGTTCACACTGGAGAAAGGCCTTATGAATGCAGGGAATGTGGAAAAACATTTACTCGAAGGTCTGCGCATTTTAAACATCAGAGACTTCATACTCGAGGAAAGCCTTACGAGTGCAGCGAATGTGGGAAATCCTTTGCTGAAACCTTCAGTCTTACTGAACACAGGAGAGTACACACTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGAAAATCATTTCATCGAAGCTCTTCTCTCCTTCGACATCAGAGAGTTCACACAGAAAGAAGTCCTTACAAGTGAAAAGAAATTTGGGAAATTCTTTAGCTAAACCTCTGTGCATCTTCTTGATCAGAGGGTTCTTACTGGATCAGGACCTTATGAGTGTGACAAACGTGGGATATTCTTTATGCAGAAGTCTTGTTTTATTACATACAGAAGAGCTCCCACTGCAGAAGGGCCTCTTGAGTGCGATGAATGTGAGAAAGCCTTCTGCCTTCTGTCATTGGATAACAGATTGTTCTCATAAGGAAAACACTGTACACGTACAGGAAATATTATTTCTTGTAAAACATAACACTGGAGGAGATGCCTTATGACGGAGCCATCTGCCTAAATTGACATACCTTCAGCATCTGCATAAACTCAATTATGTTGGAGCTGTGTGGCATTTTTCACCCTGCCGGGTTCCCTTGCCAGACATGATGTCGGTTATCTGGCAAAAGCCATTTTATGTCGGCCACGAGGCAGGTGTTCACTGTGCATCATTCATTCACCCCATGATGTTCTGGAAGTAAACCTTGGTTGTCTTTCGTTGGCCAGAGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724-ZNF418:NM_133460:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.123
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF0013017=C1_1=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF0013017=C1_1=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)