HsaEX0073622 @ hg19
Exon Skipping
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:20647]
Coordinates
chr19:58441796-58445270:-
Coord C1 exon
chr19:58445185-58445270
Coord A exon
chr19:58443798-58444014
Coord C2 exon
chr19:58441796-58441922
Length
217 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCCACTTTTCTTAGACC
3' ss Score
8.13
5' ss Seq
GTGGTAATA
5' ss Score
3.78
Exon sequences
Seq C1 exon
GCATCATCTGGCTGCAAAGAAGAGAACACACTGTGTTTGAGGGAGGAGGAAGGAGGATCAGAGTTTAAACTCCTGCCATAATGCAG
Seq A exon
ACCATTCTCCATAACAAGGGAGTGGGATTTAAATGACTCTAGGTGGACAGAGGAAAGTCGTCATTGTAGAGGGGTCACCAAGTGCAACACAGAAGTGGAATAGGGCCATGGATATCTAAAGCCCCACCTGGTTCTGTGGGGATGTGGAGCCATGCAAGAAGGCCTTCATAGAATGACTTGGGACTGCATTGCTATTGGGAGCCATGAGAATTCTGTG
Seq C2 exon
GGCACTGTGGCATTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGAGTCTCCTTAGTGAGGTTCAGAGATGCCTTTACCATGACGTGATGCTGGAGAACTGGGTACTTATATCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724_MULTIEX1-3/4=2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PU(3.2=4.5)
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCATCTGGCTGCAAAGAA
R:
CCAGGGAGGATATAAGTACCCAGT
Band lengths:
213-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)