HsaEX0073622 @ hg38
Exon Skipping
Gene
ENSG00000196724 | ZNF418
Description
zinc finger protein 418 [Source:HGNC Symbol;Acc:HGNC:20647]
Coordinates
chr19:57930428-57933963:-
Coord C1 exon
chr19:57933817-57933963
Coord A exon
chr19:57932433-57932646
Coord C2 exon
chr19:57930428-57930557
Length
214 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCCACTTTTCTTAGACC
3' ss Score
8.13
5' ss Seq
TCTGTGGTA
5' ss Score
-19.33
Exon sequences
Seq C1 exon
TCGGTGGGGAGGCAAGAGGGCGGCGAGGAGGTGATGTTACCACAGTCCCATTTGTCTGCAGGCATCATCTGGCTGCAAAGAAGAGAACACACTGTGTTTGAGGGAGGAGGAAGGAGGATCAGAGTTTAAACTCCTGCCATAATGCAG
Seq A exon
ACCATTCTCCATAACAAGGGAGTGGGATTTAAATGACTCTAGGTGGACAGAGGAAAGTCGTCATTGTAGAGGGGTCACCAAGTGCAACACAGAAGTGGAATAGGGCCATGGATATCTAAAGCCCCACCTGGTTCTGTGGGGATGTGGAGCCATGCAAGAAGGCCTTCATAGAATGACTTGGGACTGCATTGCTATTGGGAGCCATGAGAATTCT
Seq C2 exon
CAGGGCACTGTGGCATTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAGTGGAGTCTCCTTAGTGAGGTTCAGAGATGCCTTTACCATGACGTGATGCTGGAGAACTGGGTACTTATATCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196724-'9-8,'9-7,10-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000595830fB8128
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTGGGGAGGCAAGAG
R:
CCAGGGAGGATATAAGTACCCAGT
Band lengths:
277-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development